RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RPRD1AQ96P16 312 aaPredicted RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 CNPY3Q9BT09 278 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 SIK2Q9H0K1 926 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 FAM86C1Q9NVL1 165 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 POLR3BQ9NW08 1133 aaPredicted RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 ELOVL2Q9NXB9 296 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 GGA2Q9UJY4 613 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 VANGL2Q9ULK5 521 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 SSU72P8A0A1W2PR75 194 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 AKR1B15C9JRZ8 316 aaPredicted RBP22.42■■□□□ 1.18
CLN3-207ENST00000395653 NPC1O15118 1278 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 CCP110O43303 1012 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 ADAM23O75077 832 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 DESP17661 470 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 NTSR1P30989 418 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 GGCXP38435 758 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 MAPK8IP2Q13387 824 aaPredicted RBP22.42■■□□□ 1.18
CLN3-207ENST00000395653 RAB6CQ53S08 254 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 IGSF8Q969P0 613 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 LMLNQ96KR4 655 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 RAB6CQ9H0N0 254 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 MRPL47Q9HD33 250 aaKnown RBP22.42■■□□□ 1.18
CLN3-207ENST00000395653 ZDHHC4Q9NPG8 344 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 NENFQ9UMX5 172 aa22.42■■□□□ 1.18
CLN3-207ENST00000395653 CCDC163A0A0D9SF12 145 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 H0Y626 953 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 CD70P32970 193 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 DGKEP52429 567 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 CCDC122Q5T0U0 273 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 TMEM215Q68D42 235 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 LRRC31Q6UY01 552 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 CHST9Q7L1S5 443 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 C14orf80Q86SX3 495 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 ADIPOR2Q86V24 386 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 CHPFQ8IZ52 775 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 CCAR2Q8N163 923 aaKnown RBP22.41■■□□□ 1.18
CLN3-207ENST00000395653 FNIP1Q8TF40 1166 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 NTAN1Q96AB6 310 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 TMPRSS4Q9NRS4 437 aa22.41■■□□□ 1.18
CLN3-207ENST00000395653 TMEM191CA6NGB0 347 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 APBB3O95704 486 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ADRA1BP35368 520 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 OGDHQ02218 1023 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 LMAN2Q12907 356 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 SLC18A3Q16572 532 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ASTE1Q2TB18 679 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 SDE2Q6IQ49 451 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 LONP2Q86WA8 852 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ZNF683Q8IZ20 524 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 TSTD1Q8NFU3 115 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 HHIPQ96QV1 700 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ACOX2Q99424 681 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 GABRG3Q99928 467 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 CIPCQ9C0C6 399 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 KIAA1522Q9P206 1035 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 THAP10Q9P2Z0 257 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 R4GN57 208 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 IGLV3-10A0A075B6K4 115 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 LILRB5O75023 590 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 CLDN11O75508 207 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 NRG1Q02297 640 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 GFPT1Q06210 699 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 DMWDQ09019 674 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ENPP2Q13822 863 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 FSCBQ5H9T9 825 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 MBLAC2Q68D91 279 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 TMEM92Q6UXU6 159 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 ATRIPQ8WXE1 791 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 DEF6Q9H4E7 631 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 POLMQ9NP87 494 aaPredicted RBP22.4■■□□□ 1.18
CLN3-207ENST00000395653 MYO1AQ9UBC5 1043 aa22.4■■□□□ 1.18
CLN3-207ENST00000395653 MYO15AQ9UKN7 3530 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 FANCMQ8IYD8 2048 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 DRGXA6NNA5 263 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 PROB1E7EW31 1015 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 E9PAM4 449 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 HOXB2P14652 356 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 PSMA2P25787 234 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 HOXC13P31276 330 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 FNTBP49356 437 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 IRAK1P51617 712 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 CDH4P55283 916 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 OXCT1P55809 520 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 SCAPQ12770 1279 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 SLC12A1Q13621 1099 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 FUT11Q495W5 492 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 WDR5BQ86VZ2 330 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 CIR1Q86X95 450 aaPredicted RBP22.39■■□□□ 1.17
CLN3-207ENST00000395653 CCDC185Q8N715 623 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 CHP1Q99653 195 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 THAP2Q9H0W7 228 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 OSBPL2Q9H1P3 480 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 CACNA2D2Q9NY47 1150 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 EBF1Q9UH73 591 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 SNX10Q9Y5X0 201 aa22.39■■□□□ 1.17
CLN3-207ENST00000395653 AKR1B10O60218 316 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 ATP5BP06576 529 aaKnown RBP22.38■■□□□ 1.17
CLN3-207ENST00000395653 POLR2EP19388 210 aaKnown RBP22.38■■□□□ 1.17
CLN3-207ENST00000395653 PLA2G5P39877 138 aa22.38■■□□□ 1.17
CLN3-207ENST00000395653 WASP42768 502 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms