RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TRIOBPQ9H2D6 2365 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 KRBA1A5PL33 1030 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 MYO1FO00160 1098 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ATMINO43313 823 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 MSI1O43347 362 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 LUC7L3O95232 432 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CD160O95971 181 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ASLP04424 464 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 KDELR1P24390 212 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 IFNAR2P48551 515 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CLCN5P51795 746 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CLCN6P51797 869 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 MRPS21P82921 87 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TAF12Q16514 161 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 FBXO43Q4G163 708 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ZC3H12AQ5D1E8 599 aaKnown RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 RALGPS1Q5JS13 557 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 RABGAP1LQ5R372 815 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ASTLQ6HA08 431 aaPredicted RBP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 C14orf80Q86SX3 495 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC105Q8IYK2 499 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 PQLC3Q8N755 202 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 EXOC4Q96A65 974 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TBC1D31Q96DN5 1066 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.24□□□□□ -1.25
LIMA1-202ENST00000394943 MAGEH1Q9H213 219 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TMEM245Q9H330 911 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 DEF6Q9H4E7 631 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 FAM204AQ9H8W3 233 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 ST7Q9NRC1 585 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 HS3ST2Q9Y278 367 aa7.24□□□□□ -1.25
LIMA1-202ENST00000394943 TSPAN11A1L157 253 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SPECC1L-ADORA2AF8WAN1 911 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TULP1O00294 542 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ALOX15BO15296 676 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ZSCAN12O43309 604 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 KRT86O43790 486 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 GJB6O95452 261 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ABL1P00519 1130 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 RARAP10276 462 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CHRNB1P11230 501 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CTHP32929 405 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 XRCC4Q13426 336 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SIX1Q15475 284 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CYP1B1Q16678 543 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ZNF528Q3MIS6 628 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 PARP15Q460N3 678 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 DCAF12L1Q5VU92 463 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 FSTL4Q6MZW2 842 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CC2D1AQ6P1N0 951 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 RAVER1Q8IY67 606 aaKnown RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 RCOR2Q8IZ40 523 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 C12orf50Q8NA57 414 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TRIM58Q8NG06 486 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ZYG11BQ9C0D3 744 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CARD9Q9H257 536 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SYNCQ9H7C4 482 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SH3BP1Q9Y3L3 701 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC163A0A0D9SF12 145 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 A0A0U1RQJ8 604 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 FAM72CH0Y354 149 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ATP9BO43861 1147 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ARSAP15289 507 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TCF4P15884 667 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ABCB4P21439 1286 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 PSMA3P25788 255 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CA8P35219 290 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 GRIA2P42262 883 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ATXN1P54253 815 aaKnown RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 AMPD2Q01433 879 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SLC20A2Q08357 652 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 GALNT2Q10471 571 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 RFTN1Q14699 578 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SLC44A4Q53GD3 710 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 FAM72AQ5TYM5 149 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 FAM72DQ6L9T8 149 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 FAM72BQ86X60 149 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CCDC26Q8TAB7 109 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ATRIPQ8WXE1 791 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 KXD1Q9BQD3 176 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 PDCL3Q9H2J4 239 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 THAP10Q9P2Z0 257 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 XPO7Q9UIA9 1087 aaKnown RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 AP4E1Q9UPM8 1137 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 MFHAS1Q9Y4C4 1052 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CAPN6Q9Y6Q1 641 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 hCG_1818297A0A087WSY0 165 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CKMP06732 381 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 DESP17661 470 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 COMTP21964 271 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TGM2P21980 687 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 GBP2P32456 591 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 NR2C2P49116 596 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 KIF5AQ12840 1032 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CA9Q16790 459 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 PTPRNQ16849 979 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 C2CD6Q53TS8 623 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 NCBP2-AS2Q69YL0 99 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TXNRD3NBQ6F5E7 133 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 TRIM67Q6ZTA4 783 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms