RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ARMC2Q8NEN0 867 aa11.44□□□□□ -0.58
TCOF1-203ENST00000394269 NMUR1Q9HB89 426 aa11.44□□□□□ -0.58
TCOF1-203ENST00000394269 SYBUQ9NX95 663 aa11.44□□□□□ -0.58
TCOF1-203ENST00000394269 SENP1Q9P0U3 644 aa11.44□□□□□ -0.58
TCOF1-203ENST00000394269 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 SRRM3A6NNA2 597 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 F9P00740 461 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 KITP10721 976 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 SLC20A2Q08357 652 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ITKQ08881 620 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 LGSNQ5TDP6 509 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 CDHR3Q6ZTQ4 885 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF534Q76KX8 674 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ARCQ7LC44 396 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF75CPQ92670 426 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 FCRL2Q96LA5 508 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 PCDHB7Q9Y5E2 793 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ACTL7BQ9Y614 415 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 TRIOBPQ9H2D6 2365 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 TYROBPO43914 113 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 PAGE1O75459 146 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 SNRPAP09012 282 aaKnown RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 BGNP21810 368 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 FAM171BQ6P995 826 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 C4orf50Q6ZRC1 276 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 SPATA22Q8NHS9 363 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 GSDMBQ8TAX9 411 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 CCT6BQ92526 530 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 RTP4Q96DX8 246 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 OLFM3Q96PB7 478 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 XAB2Q9HCS7 855 aaKnown RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 MARCOQ9UEW3 520 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-203ENST00000394269 DSEQ9UL01 958 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 STK38LQ9Y2H1 464 aa11.43□□□□□ -0.58
TCOF1-203ENST00000394269 ARHGAP42A6NI28 874 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 C9IYK1 514 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 NFKB1P19838 968 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PTPN3P26045 913 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZBTB17Q13105 803 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 DPYSQ14117 519 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 CERCAMQ5T4B2 595 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 TTC39BQ5VTQ0 682 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 C16orf46Q6P387 395 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 VSIG1Q86XK7 387 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 DENND1AQ8TEH3 1009 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 GIPC2Q8TF65 315 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 SUSD3Q96L08 255 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 SRPK1Q96SB4 655 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 NDFIP2Q9NV92 336 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 VANGL2Q9ULK5 521 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 DCLK1O15075 740 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 OPHN1O60890 802 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 SKIP12755 728 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 TUBP50607 506 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 RAB41Q5JT25 222 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF449Q6P9G9 518 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PPP1R14CQ8TAE6 165 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 LINC01599Q8WXQ3 324 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PTPRN2Q92932 1015 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 AZIN2Q96A70 460 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF669Q96BR6 464 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 GPR62Q9BZJ7 368 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZFATQ9P243 1243 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 TRIM33Q9UPN9 1127 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ARL2BPQ9Y2Y0 163 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 C2orf71A6NGG8 1288 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 KRT38O76015 456 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 MT-CYBP00156 380 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 RPL17P18621 184 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 FDFT1P37268 417 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PGGT1BP53609 377 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 C1QTNF8P60827 252 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 USP46P62068 366 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 SEMA5AQ13591 1074 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 MAPRE1Q15691 268 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PCSK7Q16549 785 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 TRIM71Q2Q1W2 868 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 VARS2Q5ST30 1063 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 CGB2Q6NT52 195 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF598Q86UK7 904 aaKnown RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 FITM2Q8N6M3 262 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 BANPQ8N9N5 519 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 IPMKQ8NFU5 416 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 CCDC134Q9H6E4 229 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 MANSC1Q9H8J5 431 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 ZNF395Q9H8N7 513 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PLAC1Q9HBJ0 212 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 PSAT1Q9Y617 370 aa11.42□□□□□ -0.58
TCOF1-203ENST00000394269 HACD1B0YJ81 288 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 SCAMP3O14828 347 aaKnown RBP11.41□□□□□ -0.58
TCOF1-203ENST00000394269 PRPF4O43172 522 aaKnown RBP eCLIP11.41□□□□□ -0.58
TCOF1-203ENST00000394269 PMPCBO75439 489 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 ZWINTO95229 277 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 CCR1P32246 355 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 CXCR3P49682 368 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 ACTN3Q08043 901 aaPredicted RBP11.41□□□□□ -0.58
TCOF1-203ENST00000394269 MTFR1Q15390 333 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 PARP6Q2NL67 630 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 ZCCHC23Q6ZST2 131 aa11.41□□□□□ -0.58
TCOF1-203ENST00000394269 LRRC8DQ7L1W4 858 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms