RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CTNNB1P35222 781 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 ATP5C1P36542 298 aaKnown RBP18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 BMPR1AP36894 532 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 TUBP50607 506 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 COG7P83436 770 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 NUGGCQ68CJ6 796 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 KLHDC10Q6PID8 442 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 TMC7Q7Z402 723 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 UNC45BQ8IWX7 931 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 LZTR1Q8N653 840 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 FAM71DQ8N9W8 422 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 TBC1D31Q96DN5 1066 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 CCDC134Q9H6E4 229 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 OSER1Q9NX31 292 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 DTLQ9NZJ0 730 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 DNMT3LQ9UJW3 386 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 KCNU1A8MYU2 1149 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 DCLK1O15075 740 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 TEX28O15482 410 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 MSI1O43347 362 aaKnown RBP18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 LILRB3O75022 631 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 SEC24AO95486 1093 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 GBE1Q04446 702 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 HECTD3Q5T447 861 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 HIBCHQ6NVY1 386 aaPredicted RBP18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 CCDC25Q86WR0 208 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 PPIL6Q8IXY8 311 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 PPM1EQ8WY54 764 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 SLC39A13Q96H72 371 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 BTN2A3PQ96KV6 586 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 OLFM3Q96PB7 478 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 PHACTR1Q9C0D0 580 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 RASSF4Q9H2L5 321 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 INSL5Q9Y5Q6 135 aa18.74■□□□□ 0.59
CCDC88C-203ENST00000389856 LRIG2O94898 1065 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 CXCL14O95715 111 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 SYN1P17600 705 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 AUHQ13825 339 aaKnown RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 STAT4Q14765 748 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 PABPC1LQ4VXU2 614 aaKnown RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 RASIP1Q5U651 963 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 PPP1R21Q6ZMI0 780 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 RIBC1Q8N443 379 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 ZCCHC9Q8N567 271 aaKnown RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 TTC25Q96NG3 672 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 SAMD11Q96NU1 681 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 XPO6Q96QU8 1125 aaKnown RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 FRMD8Q9BZ67 464 aaPredicted RBP18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 KLC2Q9H0B6 622 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 SIK2Q9H0K1 926 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 PPCSQ9HAB8 311 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 ENTPD7Q9NQZ7 604 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 TMPRSS4Q9NRS4 437 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 IRAK3Q9Y616 596 aa18.73■□□□□ 0.59
CCDC88C-203ENST00000389856 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 SLC12A8A0AV02 714 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 TLDC2A0PJX2 215 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 C1RP00736 705 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 RB1P06400 928 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 RPL22P35268 128 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 ZNF33AQ06730 810 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 TWF1Q12792 350 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 RWDD4Q6NW29 188 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 RTL10Q7L3V2 364 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 ELMOD1Q8N336 334 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 DPF3Q92784 378 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 FCRL2Q96LA5 508 aaPredicted RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 PPANQ9NQ55 473 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 ANLNQ9NQW6 1124 aa18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 ZMYND8Q9ULU4 1186 aaPredicted RBP18.72■□□□□ 0.59
CCDC88C-203ENST00000389856 ZNF840PA6NDX5 716 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 MFSD11O43934 449 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 GCATO75600 419 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 MOCS2O96007 188 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 LRG1P02750 347 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 LINC00271P0C7V0 271 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 RBL1P28749 1068 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 HOXC13P31276 330 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 PGFP49763 221 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 MLLT6P55198 1093 aaPredicted RBP18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 MIB1Q86YT6 1006 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 HTR3CQ8WXA8 447 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 AUTS2Q8WXX7 1259 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 PSMG2Q969U7 264 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 MAGEB5Q9BZ81 275 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 USP29Q9HBJ7 922 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 LGALS13Q9UHV8 139 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 NUDT5Q9UKK9 219 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 NR2E3Q9Y5X4 410 aa18.71■□□□□ 0.59
CCDC88C-203ENST00000389856 FAM72CH0Y354 149 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 CNPP09543 421 aaKnown RBP18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 ZSCAN5DPP0CG00 497 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 SRGAP2BP0DMP2 458 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 ETS1P14921 441 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 HMGA1P17096 107 aaKnown RBP18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 GDF10P55107 478 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 RNASEH2BQ5TBB1 312 aaKnown RBP18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 FAM72AQ5TYM5 149 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 FAM72DQ6L9T8 149 aa18.71■□□□□ 0.58
CCDC88C-203ENST00000389856 ARHGEF18Q6ZSZ5 1173 aa18.71■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms