RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HMGA1P17096 107 aaKnown RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 PTPN7P35236 360 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 ADRA1BP35368 520 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 CXCR3P49682 368 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 EPHB3P54753 998 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 UBE3AQ05086 875 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 EFEMP1Q12805 493 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 PLD1Q13393 1074 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 CAMK1Q14012 370 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 DPYSL2Q16555 572 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 CYP1B1Q16678 543 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 LONRF1Q17RB8 773 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 C10orf120Q5SQS8 335 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 TRMT10CQ7L0Y3 403 aaKnown RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 KCTD15Q96SI1 283 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 GDF15Q99988 308 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 PBX4Q9BYU1 374 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 TKTL2Q9H0I9 626 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.82□□□□□ -0.36
CIITA-202ENST00000381835 MTMR10Q9NXD2 777 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 CLIC5Q9NZA1 410 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 GGT7Q9UJ14 662 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 TRANK1O15050 2925 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 I6L893 689 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 TNRC18O15417 2968 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 ECEL1O95672 775 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 IGLV3-25P01717 112 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 RPSAP08865 295 aaKnown RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 IL4RP24394 825 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 GBP2P32456 591 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 TAZQ16635 292 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 ARL13BQ3SXY8 428 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 EFHC2Q5JST6 749 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 DNAJB7Q7Z6W7 309 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 MIB1Q86YT6 1006 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 KREMEN2Q8NCW0 462 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 CCSER2Q9H7U1 834 aa12.82□□□□□ -0.36
CIITA-202ENST00000381835 SAE1Q9UBE0 346 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 USP15Q9Y4E8 981 aaPredicted RBP12.82□□□□□ -0.36
CIITA-202ENST00000381835 TCP11X1B4DZS4 312 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 CREB3O43889 395 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 KIF1CO43896 1103 aaKnown RBP12.81□□□□□ -0.36
CIITA-202ENST00000381835 TLR5O60602 858 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 UBOX5O94941 541 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 ACSL3O95573 720 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 GLUD1P00367 558 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 GPM6BQ13491 265 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 RIPK1Q13546 671 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 LILRA6Q6PI73 481 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 ARHGEF2Q92974 986 aaKnown RBP12.81□□□□□ -0.36
CIITA-202ENST00000381835 SERPINB11Q96P15 392 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 RNF157Q96PX1 679 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 DCLK3Q9C098 648 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 CDC42EP4Q9H3Q1 356 aaKnown RBP12.81□□□□□ -0.36
CIITA-202ENST00000381835 MAFFQ9ULX9 164 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 EFR3BQ9Y2G0 817 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 ANAPC1Q9H1A4 1944 aa12.81□□□□□ -0.36
CIITA-202ENST00000381835 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 LRG1P02750 347 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 C8AP07357 584 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ZDHHC11BP0C7U3 371 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 GOT1P17174 413 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ATP5DP30049 168 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ARL4AP40617 200 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ERVK-21P61565 698 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 EIF4EBP2Q13542 120 aaPredicted RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 MSANTD2Q6P1R3 559 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 BBS12Q6ZW61 710 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 PSTKQ8IV42 348 aaKnown RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 NTAN1Q96AB6 310 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 SAMD11Q96NU1 681 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ZNF670Q9BS34 389 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 NKX2-4Q9H2Z4 354 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 KCNK9Q9NPC2 374 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 FGFR1OP2Q9NVK5 253 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 TMEM120BA0PK00 339 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 SUN1O94901 812 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 MOCS2O96007 188 aaPredicted RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 HMBSP08397 361 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 CCR1P32246 355 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 CLNS1AP54105 237 aaKnown RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 AIF1P55008 147 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 NUGGCQ68CJ6 796 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 TLDC1Q6P9B6 456 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 CCDC149Q6ZUS6 474 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 PDZD8Q8NEN9 1154 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 PCDH19Q8TAB3 1148 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 PSMG2Q969U7 264 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 MYRFLQ96LU7 910 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 SERPINB12Q96P63 405 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 NACA2Q9H009 215 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 LRRC19Q9H756 370 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 ECT2Q9H8V3 914 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 OLA1Q9NTK5 396 aaKnown RBP12.8□□□□□ -0.36
CIITA-202ENST00000381835 TRPM5Q9NZQ8 1165 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 MARCH2Q9P0N8 246 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 MSRAQ9UJ68 235 aa12.8□□□□□ -0.36
CIITA-202ENST00000381835 SNX10Q9Y5X0 201 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms