RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CREB3L1Q96BA8 519 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ZNF334Q9HCZ1 680 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 PCDHGA4Q9Y5G9 962 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 USP12O75317 370 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 PIGNO95427 931 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 DEFA6Q01524 100 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 ZNF45Q02386 682 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SYNPOQ8N3V7 929 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 LIN37Q96GY3 246 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 DHX35Q9H5Z1 703 aaKnown RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 PAK6Q9NQU5 681 aaPredicted RBP8.91□□□□□ -0.98
LIG3-202ENST00000378526 PADI4Q9UM07 663 aa8.91□□□□□ -0.98
LIG3-202ENST00000378526 SERPIND1P05546 499 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 NR2F6P10588 404 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 IL32P24001 234 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 BNIP2Q12982 314 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 EAPPQ56P03 285 aaPredicted RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 OGFRL1Q5TC84 451 aaPredicted RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 ZNF567Q8N184 647 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 C8orf58Q8NAV2 365 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 TPD52L3Q96J77 140 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 AMNQ9BXJ7 453 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 VIRMAQ69YN4 1812 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 TRIM38O00635 465 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 B3GALNT1O75752 331 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 ZBTB11O95625 1053 aaPredicted RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 IFNA10P01566 189 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 IFNA4P05014 189 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 EIF6P56537 245 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 OR2B6P58173 313 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 SLC10A7Q0GE19 358 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 PGS1Q32NB8 556 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 RIPOR1Q6ZS17 1223 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 PYDC1Q8WXC3 89 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 SMG7Q92540 1137 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 RANBP3Q9H6Z4 567 aaPredicted RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 SLC39A1Q9NY26 324 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 WWOXQ9NZC7 414 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 THOC2Q8NI27 1593 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 UMODL1Q5DID0 1318 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 UGT2B11O75310 529 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 LRIG2O94898 1065 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 HPCAL1P37235 193 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 CLCN2P51788 898 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 VAMP7P51809 220 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 SLC39A6Q13433 755 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 NAB1Q13506 487 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 FAM102AQ5T9C2 384 aaPredicted RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 STYK1Q6J9G0 422 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 NYAP1Q6ZVC0 841 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 PAGE2Q7Z2X7 111 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 ZNF677Q86XU0 584 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 NXNL1Q96CM4 212 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 SPAG4Q9NPE6 437 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 GGA3Q9NZ52 723 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 A0A087X0T9 212 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 GMFGO60234 142 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 CD4P01730 458 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 GPC1P35052 558 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 MARSP56192 900 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 CDK16Q00536 496 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 ABRQ12979 859 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 KIAA1841Q6NSI8 718 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 FASTKD5Q7L8L6 764 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 C12orf43Q96C57 262 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 MTMR9Q96QG7 549 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 KCNN2Q9H2S1 579 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 NIP7Q9Y221 180 aaKnown RBP eCLIP8.9□□□□□ -0.98
LIG3-202ENST00000378526 H0YJX3 145 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 RP2O75695 350 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 ALDH1A2O94788 518 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 PLD1Q13393 1074 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 ACAD10Q6JQN1 1059 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 CHRDL2Q6WN34 429 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 IFNL1Q8IU54 200 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 C1orf131Q8NDD1 294 aaKnown RBP8.9□□□□□ -0.98
LIG3-202ENST00000378526 ATG4AQ8WYN0 398 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 AGPAT1Q99943 283 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 PCIF1Q9H4Z3 704 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 AATKQ6ZMQ8 1374 aa8.9□□□□□ -0.98
LIG3-202ENST00000378526 SCN8AQ9UQD0 1980 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 ADD1P35611 737 aaKnown RBP8.9□□□□□ -0.99
LIG3-202ENST00000378526 CYP24A1Q07973 514 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 ZNF772Q68DY9 489 aaPredicted RBP8.9□□□□□ -0.99
LIG3-202ENST00000378526 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.9□□□□□ -0.99
LIG3-202ENST00000378526 CFAP206Q8IYR0 622 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 NSUN7Q8NE18 718 aaKnown RBP8.9□□□□□ -0.99
LIG3-202ENST00000378526 OR2W6PQ8NHA6 318 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 SPPL2AQ8TCT8 520 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 JPH4Q96JJ6 628 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 TRIT1Q9H3H1 467 aaKnown RBP8.9□□□□□ -0.99
LIG3-202ENST00000378526 CYP3A43Q9HB55 503 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 MIEF1Q9NQG6 463 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 THRAP3Q9Y2W1 955 aaKnown RBP8.9□□□□□ -0.99
LIG3-202ENST00000378526 A0A1B0GTH6 734 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 PVALEFA0A1B0GWK0 134 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 CASKO14936 926 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 KCNQ3O43525 872 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 NUAK1O60285 661 aa8.9□□□□□ -0.99
LIG3-202ENST00000378526 IFNAR1P17181 557 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms