RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 COLEC11Q9BWP8 271 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 ARRDC1-AS1Q9H2J1 176 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 DEF6Q9H4E7 631 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 ASB7Q9H672 318 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 BRD9Q9H8M2 597 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 L2HGDHQ9H9P8 463 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 LMAN1LQ9HAT1 526 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 TRPV5Q9NQA5 729 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 RBAKQ9NYW8 714 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-201ENST00000355766 GDE1Q9NZC3 331 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 DNMT3BQ9UBC3 853 aaKnown RBP7.36□□□□□ -1.23
VPS13A-201ENST00000355766 MRPS23Q9Y3D9 190 aaKnown RBP7.36□□□□□ -1.23
VPS13A-201ENST00000355766 IPPQ9Y573 584 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 PIAS3Q9Y6X2 628 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 GCN1Q92616 2671 aaKnown RBP7.36□□□□□ -1.23
VPS13A-201ENST00000355766 ITPR1Q14643 2758 aa7.36□□□□□ -1.23
VPS13A-201ENST00000355766 INO80B-WBP1J3KQ70 363 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 AKR1B10O60218 316 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CLTAP09496 248 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TRIM49P0CI25 452 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TRIM49CP0CI26 452 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CHRNB1P11230 501 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CEBPBP17676 345 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TRHRP34981 398 aaPredicted RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 KLK7P49862 253 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ST13P50502 369 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 MFAP3P55082 362 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 PPP3CAQ08209 521 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 KLHL30Q0D2K2 578 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 KIF5AQ12840 1032 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 GRIK3Q13003 919 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 RAPGEF1Q13905 1077 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 LRRC32Q14392 662 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 PSMD5Q16401 504 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 DNTTIP2Q5QJE6 756 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 HEATR6Q6AI08 1181 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TANGO2Q6ICL3 276 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 WDR5BQ86VZ2 330 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ZNF677Q86XU0 584 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TRIM58Q8NG06 486 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CYB5D2Q8WUJ1 264 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 SHC3Q92529 594 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 MCRS1Q96EZ8 462 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 MSANTD3Q96H12 275 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 NT5C1BQ96P26 610 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CLSTN3Q9BQT9 956 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ADPGKQ9BRR6 497 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 FAM213AQ9BRX8 229 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CRACR2AQ9BSW2 395 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TARS2Q9BW92 718 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 EIF2AQ9BY44 585 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 IMPG2Q9BZV3 1241 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 EPB41L4BQ9H329 900 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 TRIT1Q9H3H1 467 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 MINDY3Q9H8M7 445 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 PLEKHA5Q9HAU0 1116 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 SP110Q9HB58 689 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 GPATCH2Q9NW75 528 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 RAB20Q9NX57 234 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 MIOSQ9NXC5 875 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ARHGAP20Q9P2F6 1191 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ANKFY1Q9P2R3 1169 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 CPSF3Q9UKF6 684 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 NENFQ9UMX5 172 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 DERAQ9Y315 318 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 C2CD2Q9Y426 696 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 FHOD1Q9Y613 1164 aa7.35□□□□□ -1.23
VPS13A-201ENST00000355766 SMG1Q96Q15 3661 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 ASH1LQ9NR48 2969 aaKnown RBP7.35□□□□□ -1.23
VPS13A-201ENST00000355766 A0A0A6YYK5 440 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 A0A1B0GUA9 196 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 FAM221AA4D161 298 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 USP27XA6NNY8 438 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TISP43B9A030 160 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ADAM12O43184 909 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 CILPO75339 1184 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ERLIN2O94905 339 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 RHOP08100 348 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 SRGAP2CP0DJJ0 459 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 SLC9A1P19634 815 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 HOXA6P31267 233 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 MPLP40238 635 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ARHGAP25P42331 645 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 GCLMP48507 274 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 BPIFB4P59827 614 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 YWHAEP62258 255 aaKnown RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TCEAL1Q15170 157 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 ZNF568Q3ZCX4 644 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TDRD12Q587J7 1177 aaKnown RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 IQCEQ6IPM2 695 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 NOTUMQ6P988 496 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 CRELD2Q6UXH1 353 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 Q6ZS52 159 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 IRF2BP2Q7Z5L9 587 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 TSPYL5Q86VY4 417 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 FAM71AQ8IYT1 594 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 FAM13CQ8NE31 585 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 LNX1Q8TBB1 728 aaPredicted RBP7.34□□□□□ -1.23
VPS13A-201ENST00000355766 PLEKHO2Q8TD55 490 aa7.34□□□□□ -1.23
VPS13A-201ENST00000355766 HASPINQ8TF76 798 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms