RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 C2orf49Q9BVC5 232 aaPredicted RBP15.23■□□□□ 0.03
COL17A1-201ENST00000353479 ETNK2Q9NVF9 386 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 RGPD2P0DJD1 1756 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 TBL1XO60907 577 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 C4BPAP04003 597 aaKnown RBP15.23■□□□□ 0.03
COL17A1-201ENST00000353479 GOT1P17174 413 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 PSMB4P28070 264 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 DUSP4Q13115 394 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 PREPLQ4J6C6 727 aaPredicted RBP15.23■□□□□ 0.03
COL17A1-201ENST00000353479 CCDC157Q569K6 752 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 SPANXN3Q5MJ09 141 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 TAGAPQ8N103 731 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 ZYG11BQ9C0D3 744 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 NINJ2Q9NZG7 142 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 SFMBT1Q9UHJ3 866 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 AOC2O75106 756 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 FAM153BP0C7A2 387 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 CPA3P15088 417 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 RAD23BP54727 409 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 PARP6Q2NL67 630 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 FAM153CQ494X1 144 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 VPS37AQ8NEZ2 397 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 PRPF18Q99633 342 aaKnown RBP15.23■□□□□ 0.03
COL17A1-201ENST00000353479 NRDE2Q9H7Z3 1164 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 GIMAP4Q9NUV9 329 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 CTNNAL1Q9UBT7 734 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 FAM107AO95990 144 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 ERBB2P04626 1255 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 H2AFXP16104 143 aaPredicted RBP15.23■□□□□ 0.03
COL17A1-201ENST00000353479 MATKP42679 507 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 DSG4Q86SJ6 1040 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 SUSD6Q92537 303 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 RNF157Q96PX1 679 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 YY1AP1Q9H869 796 aa15.23■□□□□ 0.03
COL17A1-201ENST00000353479 SLC9A3R1O14745 358 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 TLR5O60602 858 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ALDH1A2O94788 518 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GP5P40197 560 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 TARBP2Q15633 366 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 B3GNT5Q9BYG0 378 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 RGS18Q9NS28 235 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 LNPEPQ9UIQ6 1025 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 FBXL21Q9UKT6 434 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 DAB1O75553 588 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 SP100P23497 879 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 SMAD3P84022 425 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 TRMT11Q7Z4G4 463 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 TMC3Q7Z5M5 1100 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GRIN3AQ8TCU5 1115 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 DTX3LQ8TDB6 740 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 LRRN4Q8WUT4 740 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 MAGEB18Q96M61 343 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 KCNK16Q96T55 309 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 CNGB3Q9NQW8 809 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 MRGBPQ9NV56 204 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ZSCAN9O15535 394 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GLUD2P49448 558 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PLCL1Q15111 1095 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PARP9Q8IXQ6 854 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 C1orf127Q8N9H9 656 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 USP6NLQ92738 828 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 SRPK1Q96SB4 655 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GID8Q9NWU2 228 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 EIF3LQ9Y262 564 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PHRF1Q9P1Y6 1649 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GUCA1CO95843 209 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 SERPINA4P29622 427 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 CLCNKBP51801 687 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 BOP1Q14137 746 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 RARS2Q5T160 578 aaKnown RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 GRTP1Q5TC63 336 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ST13P4Q8IZP2 240 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 XPNPEP1Q9NQW7 623 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 DYRK1BQ9Y463 629 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 A0A0A0MRY4 1105 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 CYP2A6P11509 494 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ZNF7P17097 686 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 CD86P42081 329 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PLIN5Q00G26 463 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PDPK2PQ6A1A2 396 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 OTOAQ7RTW8 1153 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ICA1LQ8NDH6 482 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 APBB2Q92870 758 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 SPATA13Q96N96 652 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 ST6GALNAC4Q9H4F1 302 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 PRDM16Q9HAZ2 1276 aa15.22■□□□□ 0.03
COL17A1-201ENST00000353479 FAF1Q9UNN5 650 aaPredicted RBP15.22■□□□□ 0.03
COL17A1-201ENST00000353479 MOXD2PA6NHM9 499 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 CAPN15O75808 1086 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 FKBP9O95302 570 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 BGNP21810 368 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 CHKAP35790 457 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 ACTN3Q08043 901 aaPredicted RBP15.21■□□□□ 0.03
COL17A1-201ENST00000353479 CACHD1Q5VU97 1274 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 FKBP9P1Q75LS8 142 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 JOSD2Q8TAC2 188 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 OTUB1Q96FW1 271 aaPredicted RBP15.21■□□□□ 0.03
COL17A1-201ENST00000353479 PCDHB18PQ96TA0 734 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 TXNRD2Q9NNW7 524 aa15.21■□□□□ 0.03
COL17A1-201ENST00000353479 DNAJC16Q9Y2G8 782 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms