RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 SNX32Q86XE0 403 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZCCHC7Q8N3Z6 543 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 EMC1Q8N766 993 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RNF157Q96PX1 679 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PPP1R16BQ96T49 567 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MAGEE1Q9HCI5 957 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 OLA1Q9NTK5 396 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 POLG2Q9UHN1 485 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CCDC78A2IDD5 438 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ETS1P14921 441 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 LRPAP1P30533 357 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PROSER1Q86XN7 944 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 C8orf59Q8N0T1 100 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MFSD14AQ96MC6 490 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PLEKHG4BQ96PX9 1271 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PXMP2Q9NR77 195 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ERAP1Q9NZ08 941 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CD274Q9NZQ7 290 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NKX1-2Q9UD57 310 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM32AQ9Y421 112 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM25AB3EWG3 89 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM25CB3EWG5 89 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM25GB3EWG6 89 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 C19orf81C9J6K1 198 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CHRM1P11229 460 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 GJA8P48165 433 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 KRT6CP48668 564 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF135P52742 658 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MTMR2Q13614 643 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 DPP9Q86TI2 863 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SULF1Q8IWU6 871 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RSPH1Q8WYR4 309 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 OSBPL6Q9BZF3 934 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 REXO4Q9GZR2 422 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CDH19Q9H159 772 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 GPRC5DQ9NZD1 345 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 STK39Q9UEW8 545 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TSPAN16Q9UKR8 245 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MYO1GB0I1T2 1018 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 MEIS2O14770 477 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SLC4A1P02730 911 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 FGFR3P22607 806 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 GRIA3P42263 894 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 CCT8P50990 548 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF143P52747 638 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PTPN11Q06124 597 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 MSLNQ13421 630 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SPANXN2Q5MJ10 180 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 FNBP1LQ5T0N5 605 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PDPRQ8NCN5 879 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 ZSCAN18Q8TBC5 510 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SARS2Q9NP81 518 aaKnown RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DPP3Q9NY33 737 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 AP3M1Q9Y2T2 418 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PDZK1P1A8MUH7 402 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PSMD12O00232 456 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 HDAC3O15379 428 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RAD17O75943 681 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 ASLP04424 464 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PDGFRBP09619 1106 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 MGAT1P26572 445 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RBL1P28749 1068 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 GRIK3Q13003 919 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 ITPK1Q13572 414 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RNASEH2BQ5TBB1 312 aaKnown RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 CACHD1Q5VU97 1274 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RFWD3Q6PCD5 774 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 NT5DC4Q86YG4 428 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PDSS2Q86YH6 399 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 ADHFE1Q8IWW8 467 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PGAM4Q8N0Y7 254 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DCPSQ96C86 337 aaKnown RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RNF145Q96MT1 663 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SENP6Q9GZR1 1112 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SEMA6AQ9H2E6 1030 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 EIF3LQ9Y262 564 aaKnown RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 C2orf81A6NN90 581 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 MICAL2O94851 1124 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PTPN7P35236 360 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 POU4F1Q01851 419 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 CBX3Q13185 183 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 C1DQ13901 141 aaKnown RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 BAATQ14032 418 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PRKD1Q15139 912 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 CENPLQ8N0S6 344 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 FHDC1Q9C0D6 1143 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-203ENST00000343508 A0A1B0GW55 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 PDE9AO76083 593 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L2P0CJ85 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L3P0CJ86 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L4P0CJ87 422 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L5P0CJ88 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L6P0CJ89 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DUX4L7P0CJ90 424 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 SLC26A2P50443 739 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 GPR107Q5VW38 600 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 CYP2R1Q6VVX0 501 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 C10orf107Q8IVU9 208 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 RNF148Q8N7C7 305 aa4.88□□□□□ -1.63
CSMD3-203ENST00000343508 DNERQ8NFT8 737 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms