RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CACNB2Q08289 660 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 CRHR2Q13324 411 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 SDHAF4Q5VUM1 108 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ARNTL2Q8WYA1 636 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 APBA2Q99767 749 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 FRMD8Q9BZ67 464 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 NMUR2Q9GZQ4 415 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 WDCPQ9H6R7 721 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 WDR6Q9NNW5 1121 aaKnown RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 XPNPEP3Q9NQH7 507 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 ZFATQ9P243 1243 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 GABRQQ9UN88 632 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 SZT2Q5T011 3432 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 MOCS2O96007 188 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 JCHAINP01591 159 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 PTPN3P26045 913 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 FDFT1P37268 417 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 MAGEA6P43360 314 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 CCDC15Q0P6D6 951 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 CERCAMQ5T4B2 595 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 N4BP2L1Q5TBK1 243 aaPredicted RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 TAF2Q6P1X5 1199 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 RILPQ96NA2 401 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 AGAP2Q99490 1192 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 FERMT1Q9BQL6 677 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 PPARGC1AQ9UBK2 798 aaKnown RBP10.62□□□□□ -0.71
LIMA1-201ENST00000341247 OR12D3Q9UGF7 316 aa10.62□□□□□ -0.71
LIMA1-201ENST00000341247 DFFAO00273 331 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MSI1O43347 362 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 DIAPH2O60879 1101 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ENTPD5O75356 428 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ANP32DO95626 131 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 DLDP09622 509 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SLC8A1P32418 973 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ZBTB17Q13105 803 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 DPYSQ14117 519 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 RFWD3Q6PCD5 774 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 PACS1Q6VY07 963 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ARHGAP36Q6ZRI8 547 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 BZW1Q7L1Q6 419 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SPNS2Q8IVW8 549 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 GPATCH11Q8N954 259 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 TTC8Q8TAM2 541 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LRRC39Q96DD0 335 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MFSD3Q96ES6 412 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 FCRL3Q96P31 734 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 COLEC11Q9BWP8 271 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 CAB39LQ9H9S4 337 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 GTF2IRD1Q9UHL9 959 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 PADI3Q9ULW8 664 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 DCLK1O15075 740 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 OPHN1O60890 802 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ALDOAP04075 364 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 CDC25CP30307 473 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 PGFP49763 221 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ALDH18A1P54886 795 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 AQP5P55064 265 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 DLG2Q15700 870 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 C17orf99Q6UX52 265 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LIMS2Q7Z4I7 341 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 FAM13CQ8NE31 585 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 AGR3Q8TD06 166 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 CDKL2Q92772 493 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MOCOSQ96EN8 888 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SLC2A13Q96QE2 648 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SLC38A7Q9NVC3 462 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MOCS1Q9NZB8 636 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 NKX1-2Q9UD57 310 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SFMBT1Q9UHJ3 866 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 REV3LO60673 3130 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF236Q9UL36 1845 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 FCHO1O14526 889 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LRIG2O94898 1065 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ENO1P06733 434 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 NFKB1P19838 968 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 TYK2P29597 1187 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SCNN1AP37088 669 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LHX1P48742 406 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 SESN3P58005 492 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 FASTKD1Q53R41 847 aaKnown RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LRRC8BQ6P9F7 803 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 OTOP3Q7RTS5 596 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 RSPH3Q86UC2 560 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 TAC4Q86UU9 113 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LRRTM3Q86VH5 581 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 TNS4Q8IZW8 715 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 PLCD3Q8N3E9 789 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 RAB3IPQ96QF0 476 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MIPEPQ99797 713 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 MTG1Q9BT17 334 aaPredicted RBP10.61□□□□□ -0.71
LIMA1-201ENST00000341247 LRMDAQ9H2I8 198 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 ZNF180Q9UJW8 692 aa10.61□□□□□ -0.71
LIMA1-201ENST00000341247 HACD1B0YJ81 288 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 ITM2AO43736 263 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 CDK16Q00536 496 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 KDSRQ06136 332 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 PDE1CQ14123 709 aaPredicted RBP10.6□□□□□ -0.71
LIMA1-201ENST00000341247 PARP6Q2NL67 630 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 HSP90AA5PQ58FG0 334 aa10.6□□□□□ -0.71
LIMA1-201ENST00000341247 CCDC91Q7Z6B0 441 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms