RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SUPT20HL2P0C7V6 817 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 PSMA3P25788 255 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 EN1Q05925 392 aaPredicted RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 PPATQ06203 517 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 BST2Q10589 180 aaKnown RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 BROXQ5VW32 411 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 MFSD14CQ5VZR4 134 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 C16orf46Q6P387 395 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TRPC4APQ8TEL6 797 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 SLITRK1Q96PX8 696 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ELP3Q9H9T3 547 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TMA7Q9Y2S6 64 aaKnown RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TCRBV5S4A2TA0A5A2 114 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TPP1O14773 563 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ZSCAN5DPP0CG00 497 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 STAG3L1P0CL83 205 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 TPH1P17752 444 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 FAM45AQ8TCE6 357 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ASB2Q96Q27 587 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 PRKD2Q9BZL6 878 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 C6orf203Q9P0P8 240 aaPredicted RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 BTBD3Q9Y2F9 522 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 NCANO14594 1321 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 MYL4P12829 197 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 JAK1P23458 1154 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 CAPZA2P47755 286 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 XIAPP98170 497 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF177Q13360 481 aaPredicted RBP17.7■□□□□ 0.42
SYNPO-201ENST00000307662 NDUFA5Q16718 116 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 MIIPQ5JXC2 388 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 KBTBD2Q8IY47 623 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 OR7A2PQ8NGA2 310 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 SPPL2AQ8TCT8 520 aa17.7■□□□□ 0.42
SYNPO-201ENST00000307662 MMP13P45452 471 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CENPAP49450 140 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ATG4CQ96DT6 458 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CAMKK2Q96RR4 588 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CEP41Q9BYV8 373 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 TMEM39BQ9GZU3 492 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 SCUBE2Q9NQ36 999 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 PSMD12O00232 456 aaPredicted RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 KATNA1O75449 491 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 GPC1P35052 558 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 NEK3P51956 506 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 FOLH1Q04609 750 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ACAP1Q15027 740 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ABRAXAS1Q6UWZ7 409 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CASP12Q6UXS9 341 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 WDR36Q8NI36 951 aaKnown RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 GNG14A0A1W2PPG7 69 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 RRN3P2A6NIE6 340 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 HACD1B0YJ81 288 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 RAD51BO15315 384 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 SFSWAPQ12872 951 aaKnown RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 QPCTQ16769 361 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CCDC80Q76M96 950 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF276Q8N554 614 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 LRRC19Q9H756 370 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 A1CFQ9NQ94 594 aaKnown RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ZMYM2Q9UBW7 1377 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 C2CD2LO14523 706 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 CHADO15335 359 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 KRT6AP02538 564 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 TSHRP16473 764 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 SLC5A9Q2M3M2 681 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ZNF605Q86T29 641 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 MAGEE2Q8TD90 523 aaPredicted RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 SPIRE2Q8WWL2 714 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ACTR8Q9H981 624 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 PIH1D1Q9NWS0 290 aaKnown RBP17.69■□□□□ 0.42
SYNPO-201ENST00000307662 ZSCAN32Q9NX65 697 aa17.69■□□□□ 0.42
SYNPO-201ENST00000307662 EFCAB10A6NFE3 127 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ANXA6P08133 673 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ITGALP20701 1170 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 SLC11A2P49281 568 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 RIPK1Q13546 671 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 TDRD10Q5VZ19 366 aaKnown RBP17.68■□□□□ 0.42
SYNPO-201ENST00000307662 SCARA3Q6AZY7 606 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 OLFML1Q6UWY5 402 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 NANOGNBQ7Z5D8 188 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 ADGRF2Q8IZF7 708 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 RTFDC1Q9BY42 306 aaPredicted RBP17.68■□□□□ 0.42
SYNPO-201ENST00000307662 PIDD1Q9HB75 910 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 NT5MQ9NPB1 228 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 PNPLA3Q9NST1 481 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 F5H5T6 163 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 SLC25A27O95847 323 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 TIMM50Q3ZCQ8 353 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 CBWD6Q4V339 395 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 USP39Q53GS9 565 aaKnown RBP17.68■□□□□ 0.42
SYNPO-201ENST00000307662 CBWD3Q5JTY5 395 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 CBWD5Q5RIA9 395 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 C11orf88Q6PI97 169 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 CES3Q6UWW8 571 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 C3orf67Q6ZVT6 689 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 MRPL48Q96GC5 212 aaKnown RBP17.68■□□□□ 0.42
SYNPO-201ENST00000307662 TRHDEQ9UKU6 1024 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 DMTF1Q9Y222 760 aa17.68■□□□□ 0.42
SYNPO-201ENST00000307662 A0A087X1B8 175 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms