RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 APOEP02649 317 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 SRGAP2BP0DMP2 458 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 STX2P32856 288 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 PBX3P40426 434 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 GARSP41250 739 aaKnown RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 CDK16Q00536 496 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 ZBTB17Q13105 803 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 SPARCL1Q14515 664 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 MANEALQ5VSG8 457 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 FAM171A1Q5VUB5 890 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 BTBD8Q5XKL5 378 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 NUGGCQ68CJ6 796 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 TMEM173Q86WV6 379 aaPredicted RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 CEP57Q86XR8 500 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 ZNF276Q8N554 614 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 SPOCK2Q92563 424 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 RNF34Q969K3 372 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 CABS1Q96KC9 395 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 FAM193BQ96PV7 902 aaPredicted RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 TGS1Q96RS0 853 aaKnown RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 SIK2Q9H0K1 926 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 CRISPLD1Q9H336 500 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 SSU72Q9NP77 194 aaKnown RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 MOCS1Q9NZB8 636 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 ADAM28Q9UKQ2 775 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 PCDHB7Q9Y5E2 793 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 RAD54BQ9Y620 910 aa6.73□□□□□ -1.33
USP47-201ENST00000305481 MRPL42Q9Y6G3 142 aaKnown RBP6.73□□□□□ -1.33
USP47-201ENST00000305481 WDR27A2RRH5 827 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 HMX2A2RU54 273 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 FAM159BA6NKW6 160 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 KCNU1A8MYU2 1149 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SYN3O14994 580 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CPP00450 1065 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CSH1P0DML2 217 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CSH2P0DML3 217 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 MLNP12872 115 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 FGFR3P22607 806 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CA4P22748 312 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SLC11A1P49279 550 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 BFSP2Q13515 415 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 MTFR1Q15390 333 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 LRRC8BQ6P9F7 803 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ARHGAP36Q6ZRI8 547 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PID1Q7Z2X4 250 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PPM1NQ8N819 430 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 BCL7CQ8WUZ0 217 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 HDAC11Q96DB2 347 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ZNF419Q96HQ0 510 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 FUBP3Q96I24 572 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP47-201ENST00000305481 CELF6Q96J87 481 aaKnown RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 C8orf48Q96LL4 319 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 EPAS1Q99814 870 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PAK6Q9NQU5 681 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 SCML2Q9UQR0 700 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 TRIM17Q9Y577 477 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PCDHA11Q9Y5I1 949 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 BPTFQ12830 3046 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 NT5C1B-RDH14C9J2C7 533 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 NCAM2O15394 837 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 STK10O94804 968 aaKnown RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 GSTA2P09210 222 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 KCNA4P22459 653 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 MGAT1P26572 445 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ZNF135P52742 658 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 CTXN3Q4LDR2 81 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 RTP2Q5QGT7 225 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 STEAP4Q687X5 459 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 KCTD11Q693B1 232 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 TAS1R1Q7RTX1 841 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SLC26A11Q86WA9 606 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 LRRC6Q86X45 466 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ARHGAP12Q8IWW6 846 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 DCP1BQ8IZD4 617 aaKnown RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 NUP93Q8N1F7 819 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CCDC197Q8NCU1 140 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 GSDMBQ8TAX9 411 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CCT6BQ92526 530 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SCLYQ96I15 445 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 FCRL2Q96LA5 508 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 HAPLN3Q96S86 360 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PAIP2Q9BPZ3 127 aaKnown RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 TRIM62Q9BVG3 475 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 NDFIP2Q9NV92 336 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 IL37Q9NZH6 218 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SCN5AQ14524 2016 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SDR42E2A6NKP2 422 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PITPNM1O00562 1244 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 TBC1D4O60343 1298 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ALDH1A2O94788 518 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ALDH2P05091 517 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 INHBAP08476 426 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ADRA1DP25100 572 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 HOXC13P31276 330 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 CCR1P32246 355 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 PRMT2P55345 433 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 SESN2P58004 480 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 IL9RQ01113 521 aa6.72□□□□□ -1.33
USP47-201ENST00000305481 ZKSCAN8Q15776 578 aaPredicted RBP6.72□□□□□ -1.33
USP47-201ENST00000305481 BRMS1LQ5PSV4 323 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms