RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NACA2Q9H009 215 aa14.52□□□□□ -0.08
SS18-201ENST00000269137 KLC2Q9H0B6 622 aa14.52□□□□□ -0.08
SS18-201ENST00000269137 ACBD3Q9H3P7 528 aa14.52□□□□□ -0.08
SS18-201ENST00000269137 ZNF334Q9HCZ1 680 aaPredicted RBP14.52□□□□□ -0.08
SS18-201ENST00000269137 SHOC2Q9UQ13 582 aa14.52□□□□□ -0.08
SS18-201ENST00000269137 FARP1Q9Y4F1 1045 aaPredicted RBP14.52□□□□□ -0.08
SS18-201ENST00000269137 CHD9Q3L8U1 2897 aa14.52□□□□□ -0.08
SS18-201ENST00000269137 DOCK4Q8N1I0 1966 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 CLCN4P51793 760 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 ZNF33AQ06730 810 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 LRRC31Q6UY01 552 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 CEP128Q6ZU80 1094 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 HOOK3Q86VS8 718 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 ZCCHC9Q8N567 271 aaKnown RBP14.52□□□□□ -0.09
SS18-201ENST00000269137 RTL3Q8N8U3 475 aaKnown RBP14.52□□□□□ -0.09
SS18-201ENST00000269137 HTR3CQ8WXA8 447 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 LGMNQ99538 433 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 PRMT1Q99873 361 aaKnown RBP14.52□□□□□ -0.09
SS18-201ENST00000269137 FERMT1Q9BQL6 677 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 LRRC3Q9BY71 257 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 DONSONQ9NYP3 566 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 CHD7Q9P2D1 2997 aa14.52□□□□□ -0.09
SS18-201ENST00000269137 CLUHO75153 1309 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 HMBSP08397 361 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 VAV1P15498 845 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 RHOQP17081 205 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 HSD17B3P37058 310 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 KCNQ1P51787 676 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 NRLP54845 237 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 PPIDQ08752 370 aaKnown RBP14.51□□□□□ -0.09
SS18-201ENST00000269137 PPIL6Q8IXY8 311 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 KRT222Q8N1A0 295 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 ELMOD1Q8N336 334 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 MICAL1Q8TDZ2 1067 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 CPT1BQ92523 772 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 HDAC11Q96DB2 347 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 RNF38Q9H0F5 515 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 GBF1Q92538 1859 aa14.51□□□□□ -0.09
SS18-201ENST00000269137 C2orf78A6NCI8 922 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 DRGXA6NNA5 263 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 H3BNC9 293 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 MTSS1O43312 755 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 STK10O94804 968 aaKnown RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 OLFM2O95897 454 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 HARS2P49590 506 aaKnown RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 UAP1Q16222 522 aaPredicted RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 CFAP58Q5T655 872 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 AFMIDQ63HM1 303 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 FBXL22Q6P050 247 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 NLRP14Q86W24 1093 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 TMC8Q8IU68 726 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 RELL1Q8IUW5 271 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 TP53INP2Q8IXH6 220 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 CCDC33Q8N5R6 958 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 NAT8LQ8N9F0 302 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 CCNYQ8ND76 341 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 LRRN4Q8WUT4 740 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 PRCCQ92733 491 aaPredicted RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 P2RY11Q96G91 374 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 KLF16Q9BXK1 252 aaPredicted RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 ZYG11BQ9C0D3 744 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 RETREG1Q9H6L5 497 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 VANGL2Q9ULK5 521 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 ATP8A1Q9Y2Q0 1164 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 OBSL1O75147 1896 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 DENND4CQ5VZ89 1909 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 A0A0A0MRY4 1105 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 GOLGA6BA6NDN3 693 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 ACSL4O60488 711 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 IRS1P35568 1242 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 CHKAP35790 457 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 GARSP41250 739 aaKnown RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 MAGEA6P43360 314 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 SLC11A2P49281 568 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 PMS2P54278 862 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 AP1B1Q10567 949 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 C5orf22Q49AR2 442 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 GAREM2Q75VX8 874 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 LRRC49Q8IUZ0 686 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 ARHGAP12Q8IWW6 846 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 SPATA13Q96N96 652 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 TSGA13Q96PP4 275 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 PHACTR1Q9C0D0 580 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 PABPC3Q9H361 631 aaKnown RBP14.5□□□□□ -0.09
SS18-201ENST00000269137 TMEM248Q9NWD8 314 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 MPP6Q9NZW5 540 aa14.5□□□□□ -0.09
SS18-201ENST00000269137 CCDC85CA6NKD9 419 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 CHADO15335 359 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 OPHN1O60890 802 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 CLASP2O75122 1294 aaKnown RBP14.49□□□□□ -0.09
SS18-201ENST00000269137 STC2O76061 302 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 PFKLP17858 780 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 GABRR2P28476 465 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 CDC25CP30307 473 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 HOXA9P31269 272 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 WASHC5Q12768 1159 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 GPS2Q13227 327 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 GPM6BQ13491 265 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 KCNJ11Q14654 390 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 PPM1LQ5SGD2 360 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms