RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 TTC17Q96AE7 1141 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 PRICKLE1Q96MT3 831 aaPredicted RBP10.09□□□□□ -0.79
VPS41-201ENST00000265745 DDX50Q9BQ39 737 aaKnown RBP10.09□□□□□ -0.79
VPS41-201ENST00000265745 TRIM62Q9BVG3 475 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 GTPBP2Q9BX10 602 aaKnown RBP10.09□□□□□ -0.79
VPS41-201ENST00000265745 NUCKS1Q9H1E3 243 aaKnown RBP10.09□□□□□ -0.79
VPS41-201ENST00000265745 THAP9Q9H5L6 903 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 POPDC2Q9HBU9 364 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 PRSS16Q9NQE7 514 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 CHMP5Q9NZZ3 219 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 STIM2Q9P246 746 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 APEX2Q9UBZ4 518 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 SUSD2Q9UGT4 822 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 WASF3Q9UPY6 502 aa10.09□□□□□ -0.79
VPS41-201ENST00000265745 MYO18AQ92614 2054 aaKnown RBP10.09□□□□□ -0.79
VPS41-201ENST00000265745 LAMA1P25391 3075 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 CAPN9O14815 690 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 OPHN1O60890 802 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 IGLV3-25P01717 112 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 SYPP08247 313 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ACADMP11310 421 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 CD59P13987 128 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 POLR2EP19388 210 aaKnown RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 USP8P40818 1118 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ZBTB16Q05516 673 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ZNF252P-AS1Q0IIN9 211 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 PDCLQ13371 301 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 EIF4EBP2Q13542 120 aaPredicted RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 NR6A1Q15406 480 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ARHGAP44Q17R89 818 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 DCAF6Q58WW2 860 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ZC3H12AQ5D1E8 599 aaKnown RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 MFN1Q8IWA4 741 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 HDDC3Q8N4P3 179 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 ZNF366Q8N895 744 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 HJURPQ8NCD3 748 aaPredicted RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 OR2I1PQ8NGU4 316 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 C1orf216Q8TAB5 229 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 SHC3Q92529 594 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 MYO19Q96H55 970 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 LHX5Q9H2C1 402 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 SLC32A1Q9H598 525 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 DNAAF2Q9NVR5 837 aaKnown RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 TJP2Q9UDY2 1190 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 SUN2Q9UH99 717 aa10.08□□□□□ -0.8
VPS41-201ENST00000265745 XPO7Q9UIA9 1087 aaKnown RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 INTS6Q9UL03 887 aaKnown RBP10.08□□□□□ -0.8
VPS41-201ENST00000265745 CACNA1BQ00975 2339 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CEP295Q9C0D2 2601 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 EML5Q05BV3 1969 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 A0A1B0GTW7 788 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 MEI4A8MW99 385 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 KCNU1A8MYU2 1149 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 GJB3O75712 270 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 TRUB2O95900 331 aaKnown RBP10.07□□□□□ -0.8
VPS41-201ENST00000265745 MOCS2O96007 188 aaPredicted RBP10.07□□□□□ -0.8
VPS41-201ENST00000265745 GLI1P08151 1106 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 ACSL1P33121 698 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CSKP41240 450 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 MTIF2P46199 727 aaKnown RBP10.07□□□□□ -0.8
VPS41-201ENST00000265745 RPS14P62263 151 aaKnown RBP10.07□□□□□ -0.8
VPS41-201ENST00000265745 PITX1P78337 314 aaPredicted RBP10.07□□□□□ -0.8
VPS41-201ENST00000265745 SLC14A1Q13336 389 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 FSCBQ5H9T9 825 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 DCAF12L1Q5VU92 463 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 DPY19L2P1Q6NXN4 242 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 MMS22LQ6ZRQ5 1243 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 FAM124AQ86V42 546 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CACUL1Q86Y37 369 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CFAP52Q8N1V2 620 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CARNMT1Q8N4J0 409 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 KDM1BQ8NB78 822 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 PPP1R13BQ96KQ4 1090 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 BTN2A3PQ96KV6 586 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CPXM1Q96SM3 734 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 ZDHHC5Q9C0B5 715 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 PCED1AQ9H1Q7 454 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CLSTN2Q9H4D0 955 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 MTG2Q9H4K7 406 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 FBRSQ9HAH7 460 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 SIX2Q9NPC8 291 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS41-201ENST00000265745 VPS9D1Q9Y2B5 631 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 CACNA1EQ15878 2313 aa10.07□□□□□ -0.8
VPS41-201ENST00000265745 TYW5A2RUC4 315 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 FOXN3O00409 490 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 BCAT2O15382 392 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 LUC7L3O95232 432 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 TOP3BO95985 862 aaKnown RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 APOEP02649 317 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 ASLP04424 464 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 TACR2P21452 398 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 ERCC5P28715 1186 aaPredicted RBP10.06□□□□□ -0.8
VPS41-201ENST00000265745 CDK17Q00537 523 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 PTK2Q05397 1052 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 FOXC1Q12948 553 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 GRIK2Q13002 908 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 CDH18Q13634 790 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 ARID5BQ14865 1188 aa10.06□□□□□ -0.8
VPS41-201ENST00000265745 MAN2A1Q16706 1144 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms