RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 CDKL3Q8IVW4 592 aaPredicted RBP12.73□□□□□ -0.37
NUP88-201ENST00000225696 PPP4R1Q8TF05 950 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 SEPT1Q8WYJ6 367 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 DCUN1D1Q96GG9 259 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 PRICKLE1Q96MT3 831 aaPredicted RBP12.73□□□□□ -0.37
NUP88-201ENST00000225696 OLFM3Q96PB7 478 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 CSPG4P5Q96PW8 444 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 SIKE1Q9BRV8 207 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 VCX3BQ9H321 246 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 VCX3AQ9NNX9 186 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 IRAK4Q9NWZ3 460 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 DCDC2Q9UHG0 476 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 HACL1Q9UJ83 578 aa12.73□□□□□ -0.37
NUP88-201ENST00000225696 BARX2Q9UMQ3 279 aaPredicted RBP12.73□□□□□ -0.37
NUP88-201ENST00000225696 PPEF2O14830 753 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 MDM4O15151 490 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 USP12O75317 370 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 DGKIO75912 1065 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 CHRNGP07510 517 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 CPA3P15088 417 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 SLC6A3Q01959 620 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.72□□□□□ -0.37
NUP88-201ENST00000225696 FAM160B1Q5W0V3 765 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 HEATR6Q6AI08 1181 aaKnown RBP12.72□□□□□ -0.37
NUP88-201ENST00000225696 EPGNQ6UW88 154 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 RBM44Q6ZP01 1051 aaKnown RBP12.72□□□□□ -0.37
NUP88-201ENST00000225696 LILRA2Q8N149 483 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 COLGALT1Q8NBJ5 622 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 ICA1LQ8NDH6 482 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 QKIQ96PU8 341 aaKnown RBP eCLIP12.72□□□□□ -0.372e-6■■■■□ 21.4
NUP88-201ENST00000225696 AGAP2Q99490 1192 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 STN1Q9H668 368 aaKnown RBP12.72□□□□□ -0.37
NUP88-201ENST00000225696 APPL1Q9UKG1 709 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 MAGED2Q9UNF1 606 aaPredicted RBP12.72□□□□□ -0.37
NUP88-201ENST00000225696 DTNAQ9Y4J8 743 aa12.72□□□□□ -0.37
NUP88-201ENST00000225696 G3V2L1 256 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 STX16-NPEPL1H3BU86 382 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 NEMP1O14524 444 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DPYSL4O14531 572 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 ATP6V1B1P15313 513 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 XRCC1P18887 633 aaPredicted RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 CNTFP26441 200 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 THOP1P52888 689 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PKNOX1P55347 436 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 MRPS22P82650 360 aaKnown RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 MS4A2Q01362 244 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DEUP1Q05D60 604 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 SOWAHAQ2M3V2 549 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PKDCCQ504Y2 493 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PQLC1Q8N2U9 271 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DCLK2Q8N568 766 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.71□□□□□ -0.37
NUP88-201ENST00000225696 FAM81AQ8TBF8 368 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 ACMSDQ8TDX5 336 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 HTR3CQ8WXA8 447 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 NDRG1Q92597 394 aaKnown RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 JADE3Q92613 823 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 COPS5Q92905 334 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 MRPL45Q9BRJ2 306 aaKnown RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 SNX15Q9NRS6 342 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 ARHGAP26Q9UNA1 814 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 AP4E1Q9UPM8 1137 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 SSX2IPQ9Y2D8 614 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 ZNF638Q14966 1978 aaKnown RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 CRTAMO95727 393 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 GRK2P25098 689 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PSMB4P28070 264 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DPP6P42658 865 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 NUDT2P50583 147 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 MYBPC1Q00872 1141 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 INCA1Q0VD86 236 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DPYSL2Q16555 572 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 NADK2Q4G0N4 442 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 TMEM198Q66K66 360 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 EFCAB12Q6NXP0 572 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 METTL7BQ6UX53 244 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 CYS1Q717R9 158 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DEFB132Q7Z7B7 95 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 SPNS2Q8IVW8 549 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 NME8Q8N427 588 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 USP13Q92995 863 aaPredicted RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 GPR20Q99678 358 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 CDH19Q9H159 772 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PREBQ9HCU5 417 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 PICK1Q9NRD5 415 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 DDX18Q9NVP1 670 aaKnown RBP12.71□□□□□ -0.37
NUP88-201ENST00000225696 LZTS1Q9Y250 596 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 TNFSF13BQ9Y275 285 aa12.71□□□□□ -0.37
NUP88-201ENST00000225696 SCN1AP35498 2009 aa12.71□□□□□ -0.38
NUP88-201ENST00000225696 AP1G1O43747 822 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 MFSD11O43934 449 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 IL18RAPO95256 599 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 ASLP04424 464 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 JUNP05412 331 aaKnown RBP12.7□□□□□ -0.38
NUP88-201ENST00000225696 DPEP1P16444 411 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 MPSTP25325 297 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 EPHA3P29320 983 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 IGBP1P78318 339 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 CDKL1Q00532 357 aa12.7□□□□□ -0.38
NUP88-201ENST00000225696 AMHR2Q16671 573 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms