RNA–Protein interactions for RNA: ENST00000640421.1

SPIN3-238, Transcript of spindlin family member 3, human

TSL 5

Gene SPIN3, Length 1,872 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIN3-238	ENST00000640421	TUBB2B	Q9BVA1	445 aa		18.34	■□□□□ 0.53
SPIN3-238	ENST00000640421	TDP1	Q9NUW8	608 aa		18.34	■□□□□ 0.53
SPIN3-238	ENST00000640421	SLC12A6	Q9UHW9	1150 aa		18.34	■□□□□ 0.53
SPIN3-238	ENST00000640421	VANGL2	Q9ULK5	521 aa		18.34	■□□□□ 0.53
SPIN3-238	ENST00000640421	R3HDM2	Q9Y2K5	976 aa	Known RBP	18.34	■□□□□ 0.53
SPIN3-238	ENST00000640421	ZNF487	B1APH4	448 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421		E9PAM4	449 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421		H3BQ06	376 aa	Predicted RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	EEF2K	O00418	725 aa	Known RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	CST8	O60676	142 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	ARL4A	P40617	200 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	NRG1	Q02297	640 aa	Predicted RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	ATAT1	Q5SQI0	421 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	CES5A	Q6NT32	575 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	RFWD3	Q6PCD5	774 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	RFX6	Q8HWS3	928 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	PLD5	Q8N7P1	536 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	ST13P5	Q8NFI4	369 aa	Predicted RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	RSPRY1	Q96DX4	576 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	LRRC3B	Q96PB8	259 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	EPAS1	Q99814	870 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	FAM118B	Q9BPY3	351 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	CARD6	Q9BX69	1037 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	RCOR3	Q9P2K3	495 aa	Predicted RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	SAE1	Q9UBE0	346 aa	Predicted RBP	18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	RNF14	Q9UBS8	474 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	DOCK4	Q8N1I0	1966 aa		18.33	■□□□□ 0.53
SPIN3-238	ENST00000640421	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421		H3BRJ5	948 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	TRDMT1	O14717	391 aa	Known RBP	18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	TPI1	P60174	286 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	FAM78A	Q5JUQ0	283 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	SLC9A4	Q6AI14	798 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	FBXL22	Q6P050	247 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	BBS12	Q6ZW61	710 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	ZNF572	Q7Z3I7	529 aa	Predicted RBP	18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	CHSY1	Q86X52	802 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	IGSF8	Q969P0	613 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	AZIN2	Q96A70	460 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	HAUS1	Q96CS2	278 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	P2RY11	Q96G91	374 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	POMK	Q9H5K3	350 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	EFR3B	Q9Y2G0	817 aa		18.33	■□□□□ 0.52
SPIN3-238	ENST00000640421	TACR2	P21452	398 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	EPHB2	P29323	1055 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	HOXC13	P31276	330 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	PAFAH1B1	P43034	410 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	HCAR3	P49019	387 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	SLC11A2	P49281	568 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	SGSH	P51688	502 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	ZNF77	Q15935	545 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	NPNT	Q6UXI9	565 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	HTR3D	Q70Z44	454 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	BBS7	Q8IWZ6	715 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	PRICKLE1	Q96MT3	831 aa	Predicted RBP	18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	ASB16	Q96NS5	453 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	MYADM	Q96S97	322 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	RBM12	Q9NTZ6	932 aa	Known RBP	18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	MPP6	Q9NZW5	540 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	ZMYM5	Q9UJ78	669 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	STOML2	Q9UJZ1	356 aa		18.32	■□□□□ 0.52
SPIN3-238	ENST00000640421	IGLV3-10	A0A075B6K4	115 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	KRIT1	O00522	736 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	FOSL2	P15408	326 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	PECAM1	P16284	738 aa	Predicted RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	ERCC2	P18074	760 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	CETN2	P41208	172 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	VCP	P55072	806 aa	Known RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	USP4	Q13107	963 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	ADGRF1	Q5T601	910 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	NCBP2-AS2	Q69YL0	99 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	RWDD4	Q6NW29	188 aa	Known RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	CIR1	Q86X95	450 aa	Predicted RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	PRELID2	Q8N945	189 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	NETO2	Q8NC67	525 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	SPATA4	Q8NEY3	305 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	ATG4A	Q8WYN0	398 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	SH3BP1	Q9Y3L3	701 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	RIOK3	O14730	519 aa	Known RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	DCLK1	O15075	740 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	CNTN5	O94779	1100 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	TJP3	O95049	919 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	VIPR2	P41587	438 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	C2orf54	Q08AI8	447 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	KCTD19	Q17RG1	926 aa	Predicted RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	ALF	Q53S48	1182 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	LGI2	Q8N0V4	545 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	PPM1E	Q8WY54	764 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	SUSD6	Q92537	303 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	TBC1D31	Q96DN5	1066 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	RIPOR3	Q96MK2	946 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	MAK16	Q9BXY0	300 aa	Known RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	DCLK3	Q9C098	648 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	NDFIP2	Q9NV92	336 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	CDH7	Q9ULB5	785 aa		18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	USP15	Q9Y4E8	981 aa	Predicted RBP	18.31	■□□□□ 0.52
SPIN3-238	ENST00000640421	GFRA2	O00451	464 aa		18.3	■□□□□ 0.52
SPIN3-238	ENST00000640421	MAP3K6	O95382	1288 aa		18.3	■□□□□ 0.52
SPIN3-238	ENST00000640421	KCNA5	P22460	613 aa		18.3	■□□□□ 0.52
SPIN3-238	ENST00000640421	FCAR	P24071	287 aa		18.3	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms