RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 KRT85P78386 507 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 ADIGQ0VDE8 80 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 GOLGA7BQ2TAP0 167 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 FAM133BQ5BKY9 247 aaKnown RBP17.11■□□□□ 0.33
CLN3-255ENST00000637100 MBLAC2Q68D91 279 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 LCLAT1Q6UWP7 414 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 PDZD3Q86UT5 571 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 HSCBQ8IWL3 235 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 ZNF557Q8N988 423 aaPredicted RBP17.11■□□□□ 0.33
CLN3-255ENST00000637100 WFDC5Q8TCV5 224 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 CYB5D2Q8WUJ1 264 aa17.11■□□□□ 0.33
CLN3-255ENST00000637100 E9PAM4 449 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 SLC16A3O15427 465 aaKnown RBP17.1■□□□□ 0.33
CLN3-255ENST00000637100 ZNF202O95125 648 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 IGHV4-34P06331 123 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 ATP5BP06576 529 aaKnown RBP17.1■□□□□ 0.33
CLN3-255ENST00000637100 EPB41P11171 864 aaKnown RBP17.1■□□□□ 0.33
CLN3-255ENST00000637100 GRK6P43250 576 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 RPL34P49207 117 aaKnown RBP17.1■□□□□ 0.33
CLN3-255ENST00000637100 ARID5AQ03989 594 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 TEAD4Q15561 434 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 KCNT1Q5JUK3 1230 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 FAM124AQ86V42 546 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 GALNT15Q8N3T1 639 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 FIBINQ8TAL6 211 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 MDM1Q8TC05 714 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 RNF139Q8WU17 664 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 EDEM1Q92611 657 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 SLC35C1Q96A29 364 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 GOLPH3LQ9H4A5 285 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 HESX1Q9UBX0 185 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 ADAMTS1Q9UHI8 967 aa17.1■□□□□ 0.33
CLN3-255ENST00000637100 VILLO15195 856 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 PAEPP09466 180 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 SLC6A4P31645 630 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 CD70P32970 193 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 YWHAEP62258 255 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 RACK1P63244 317 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 CNGA2Q16280 664 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 COL28A1Q2UY09 1125 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 HNRNPA1L2Q32P51 320 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 FNDC3BQ53EP0 1204 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 ZNF776Q68DI1 518 aaPredicted RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 UNC45BQ8IWX7 931 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 SCUBE3Q8IX30 993 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 ZNF366Q8N895 744 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 SPATA20Q8TB22 786 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 TFAP2BQ92481 460 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 MRGPRX3Q96LB0 322 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 IPO9Q96P70 1041 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 ZSWIM1Q9BR11 485 aa17.09■□□□□ 0.33
CLN3-255ENST00000637100 INTS6Q9UL03 887 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 COL5A1P20908 1838 aaPredicted RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 SETXQ7Z333 2677 aaKnown RBP17.09■□□□□ 0.33
CLN3-255ENST00000637100 LOC400499M0QZD8 3231 aa17.08■□□□□ 0.33
CLN3-255ENST00000637100 A0A087WV48 116 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 A0A1B0GTQ1 180 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 TRABD2BA6NFA1 517 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 H0Y8X5 98 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 MSI1O43347 362 aaKnown RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 ACSL4O60488 711 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 DNTTP04053 509 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 ASLP04424 464 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 FYNP06241 537 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 HSP90AA1P07900 732 aaKnown RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 TBXAS1P24557 533 aaPredicted RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 PRCPP42785 496 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 CCT8P50990 548 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 FKBP3Q00688 224 aaKnown RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 NNTQ13423 1086 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 NUGGCQ68CJ6 796 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 NADSYN1Q6IA69 706 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 PMF1Q6P1K2 205 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 C19orf48Q6RUI8 117 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 CACUL1Q86Y37 369 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 SMYD4Q8IYR2 804 aaPredicted RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 UBA3Q8TBC4 463 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 SLC39A13Q96H72 371 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 HSFY1Q96LI6 401 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 SCAND2PQ9GZW5 306 aaPredicted RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 PABPC3Q9H361 631 aaKnown RBP17.08■□□□□ 0.32
CLN3-255ENST00000637100 RAXQ9Y2V3 346 aa17.08■□□□□ 0.32
CLN3-255ENST00000637100 GCN1Q92616 2671 aaKnown RBP17.07■□□□□ 0.32
CLN3-255ENST00000637100 URB1O60287 2271 aaKnown RBP17.07■□□□□ 0.32
CLN3-255ENST00000637100 ITIH6Q6UXX5 1313 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 A0A1W2PPC4 97 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 POLR2EP19388 210 aaKnown RBP17.07■□□□□ 0.32
CLN3-255ENST00000637100 GALCP54803 685 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 TTC31Q49AM3 519 aaPredicted RBP17.07■□□□□ 0.32
CLN3-255ENST00000637100 KIAA0895LQ68EN5 471 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 RFWD3Q6PCD5 774 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 BEND5Q7L4P6 421 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 SIX6OS1Q8N1H7 587 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 LMO3Q8TAP4 145 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 FAM131CQ96AQ9 280 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 EBF2Q9HAK2 575 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLN3-255ENST00000637100 PCDHGA1Q9Y5H4 931 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 TMEM131Q92545 1883 aa17.07■□□□□ 0.32
CLN3-255ENST00000637100 CELSR3Q9NYQ7 3312 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms