RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ZIK1Q3SY52 487 aaPredicted RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 CERCAMQ5T4B2 595 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 EMC10Q5UCC4 262 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KLHDC7AQ5VTJ3 777 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 NUGGCQ68CJ6 796 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 DENND2CQ68D51 928 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 NADSYN1Q6IA69 706 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 FBXO38Q6PIJ6 1188 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 CLEC9AQ6UXN8 241 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 NOL8Q76FK4 1167 aaKnown RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KRT28Q7Z3Y7 464 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SESTD1Q86VW0 696 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SKAP1Q86WV1 359 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 DGKHQ86XP1 1220 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 RAB11FIP4Q86YS3 637 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SFTPA1Q8IWL2 248 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 IZUMO1Q8IYV9 350 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KIAA0319LQ8IZA0 1049 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 ABRAQ8N0Z2 381 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SDR16C5Q8N3Y7 309 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 IQCF1Q8N6M8 205 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 OR56A3Q8NH54 315 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 LMO3Q8TAP4 145 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 OIT3Q8WWZ8 545 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 GRAMD1AQ96CP6 724 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 IQCDQ96DY2 449 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 VPS50Q96JG6 964 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SNX22Q96L94 193 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 HIST1H2AAQ96QV6 131 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 EIF3CQ99613 913 aaKnown RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 MESP1Q9BRJ9 268 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 C17orf80Q9BSJ5 609 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 RBM38Q9H0Z9 239 aaKnown RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 CHST8Q9H2A9 424 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 USP29Q9HBJ7 922 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 TMEM8AQ9HCN3 771 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 HEYLQ9NQ87 328 aaPredicted RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 DECR2Q9NUI1 292 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 STK32BQ9NY57 414 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 MGAT4CQ9UBM8 478 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 MAGED2Q9UNF1 606 aaPredicted RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 DRG1Q9Y295 367 aaKnown RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 PAXBP1Q9Y5B6 917 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SNX14Q9Y5W7 946 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 SIRT4Q9Y6E7 314 aaPredicted RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 MAP2P11137 1827 aaKnown RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KIF20BQ96Q89 1820 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KIF27Q86VH2 1401 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 UACAQ9BZF9 1416 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 CAMSAP2Q08AD1 1489 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGAP35Q9NRY4 1499 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 ADGRB3O60242 1522 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 PRDM15P57071 1507 aaPredicted RBP1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 KDM5DQ9BY66 1539 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 ARHGEF5Q12774 1597 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 DIP2AQ14689 1571 aa1.3□□□□□ -2.2
SMARCB1-209ENST00000635578 USP32Q8NFA0 1604 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 QRICH2Q9H0J4 1663 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TRPM3Q9HCF6 1732 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TAF1LQ8IZX4 1826 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SPEF2Q9C093 1822 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 A0A087WWL8 130 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 A0A1W2PPC1 479 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TRIM43BA6NCK2 446 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 C2CD4BA6NLJ0 364 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SRRM3A6NNA2 597 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 F8W8V4 182 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 FOXN3O00409 490 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 APAF1O14727 1248 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ZSCAN9O15535 394 aaPredicted RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 RRP9O43818 475 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 LDB3O75112 727 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 COQ9O75208 318 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 EPN2O95208 641 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 IL18RAPO95256 599 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MT-ND5P03915 603 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ANXA2P07355 339 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SLC3A2P08195 630 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 IFIT2P09913 472 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 SRGAP2BP0DMP2 458 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TXNP10599 105 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 IDEP14735 1019 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 CD19P15391 556 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 BTF3P20290 206 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 KCNA3P22001 575 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ACVR2AP27037 513 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 EPHA3P29320 983 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TACR3P29371 465 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 NTSR1P30989 418 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 UQCRC1P31930 480 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ATICP31939 592 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 MLH1P40692 756 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PIK3CBP42338 1070 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 ALDH7A1P49419 539 aaKnown RBP1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 PRIM2P49643 509 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 TAF6P49848 677 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 DIO1P49895 249 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 GATMP50440 423 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 HSPA2P54652 639 aa1.29□□□□□ -2.2
SMARCB1-209ENST00000635578 B4GALNT1Q00973 533 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms