RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 RNF168Q8IYW5 571 aaPredicted RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 PCDH19Q8TAB3 1148 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 AZIN2Q96A70 460 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 EFCAB1Q9HAE3 211 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 KCNK13Q9HB14 408 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 PRMT7Q9NVM4 692 aaPredicted RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 KLK14Q9P0G3 267 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 STAP1Q9ULZ2 295 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 PCDHA11Q9Y5I1 949 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 COMMD3-BMI1R4GMX3 469 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SORBS2O94875 1100 aaKnown RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 OR6B1O95007 311 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 FDFT1P37268 417 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 TPI1P60174 286 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SP2Q02086 613 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SLC12A1Q13621 1099 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SPATA6LQ8N4H0 392 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 CMASQ8NFW8 434 aaPredicted RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 RCN3Q96D15 328 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 LENG8Q96PV6 779 aaPredicted RBP12.92□□□□□ -0.34
LIG1-221ENST00000613670 EPAS1Q99814 870 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SDCBP2Q9H190 292 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 POPDC2Q9HBU9 364 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 EURLQ9NYK6 297 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 NDUFA13Q9P0J0 144 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 LZTS1Q9Y250 596 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SLC4A1P02730 911 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 FAM58BPP0C7Q3 252 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 MCF2P10911 925 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SERPINB8P50452 374 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SLC4A11Q8NBS3 891 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 SLC7A14Q8TBB6 771 aa12.92□□□□□ -0.34
LIG1-221ENST00000613670 ARHGEF37A1IGU5 675 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 BIRC5O15392 142 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 MAP3K13O43283 966 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 RAP1GDS1P52306 607 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PLOD1Q02809 727 aaPredicted RBP12.91□□□□□ -0.34
LIG1-221ENST00000613670 KLF10Q13118 480 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 DGKDQ16760 1214 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 AAGABQ6PD74 315 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 FBXO16Q8IX29 292 aaPredicted RBP12.91□□□□□ -0.34
LIG1-221ENST00000613670 PHTF2Q8N3S3 785 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 C1orf127Q8N9H9 656 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 FAM156AQ8NDB6 213 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 BEST2Q8NFU1 509 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 FAM81AQ8TBF8 368 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PPP1R13LQ8WUF5 828 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 NAT14Q8WUY8 206 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PEBP4Q96S96 227 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 DCUN1D5Q9BTE7 237 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 CHST12Q9NRB3 414 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIG1-221ENST00000613670 PCDHGC3Q9UN70 934 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 AP4B1Q9Y6B7 739 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 V9GYQ6 96 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PAPSS1O43252 624 aaPredicted RBP12.91□□□□□ -0.34
LIG1-221ENST00000613670 PLIN3O60664 434 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 HUS1O60921 280 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PYGLP06737 847 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 ARL2P36404 184 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 SLC6A3Q01959 620 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 DLG2Q15700 870 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PQLC1Q8N2U9 271 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.91□□□□□ -0.34
LIG1-221ENST00000613670 IPMKQ8NFU5 416 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 FNIP1Q8TF40 1166 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 COPS5Q92905 334 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 PIWIL1Q96J94 861 aaKnown RBP12.91□□□□□ -0.34
LIG1-221ENST00000613670 LRRC40Q9H9A6 602 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 NMRAL1Q9HBL8 299 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 SYBUQ9NX95 663 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 CYTH4Q9UIA0 394 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 SORCS3Q9UPU3 1222 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 KDM4FA0A1W2PPD8 638 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 DFFAO00273 331 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 HSPA8P11142 646 aaKnown RBP12.91□□□□□ -0.34
LIG1-221ENST00000613670 ASPAP45381 313 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 CTC1Q2NKJ3 1217 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 C4orf22Q6V702 233 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 ZBTB46Q86UZ6 589 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 OTUD5Q96G74 571 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 ELMO2Q96JJ3 720 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 GPAMQ9HCL2 828 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 SNX15Q9NRS6 342 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 VANGL2Q9ULK5 521 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 NUMBLQ9Y6R0 609 aa12.91□□□□□ -0.34
LIG1-221ENST00000613670 RFPL1O75677 317 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 DPEP1P16444 411 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 IDH3AP50213 366 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PLK1P53350 603 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PPIDQ08752 370 aaKnown RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 KCNJ11Q14654 390 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 C6orf52Q5T4I8 152 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 PPP1R26Q5T8A7 1209 aaPredicted RBP12.9□□□□□ -0.34
LIG1-221ENST00000613670 OR52E8Q6IFG1 317 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ZNF786Q8N393 782 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 FBXW8Q8N3Y1 598 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 ZNF781Q8N8C0 355 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 AGBL3Q8NEM8 1001 aa12.9□□□□□ -0.34
LIG1-221ENST00000613670 OR6P1Q8NGX9 317 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms