RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ARHGEF26Q96DR7 871 aa17.12■□□□□ 0.33
CCDC28A-202ENST00000611852 F5H5T6 163 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 K7EQS6 105 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 TBL1XO60907 577 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 APODP05090 189 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 H2AFZP0C0S5 128 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 PSMA2P25787 234 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 GGCXP38435 758 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 MAGEA9P43362 315 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 RPS24P62847 133 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 GAS6Q14393 721 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 FBXO43Q4G163 708 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 PREPLQ4J6C6 727 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 FBXL22Q6P050 247 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 Q6ZS52 159 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 H2AFVQ71UI9 128 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 CFAP52Q8N1V2 620 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 TERB1Q8NA31 727 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 C1orf74Q96LT6 269 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 HAPLN3Q96S86 360 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 NUP85Q9BW27 656 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 SLC2A11Q9BYW1 496 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 SIK2Q9H0K1 926 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 CHRDQ9H2X0 955 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 SLC27A6Q9Y2P4 619 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 TYW5A2RUC4 315 aaKnown RBP17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 ADRA1BP35368 520 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 ARL13BQ3SXY8 428 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 CCDC170Q8IYT3 715 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 CTNNBL1Q8WYA6 563 aaPredicted RBP17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 STIM2Q9P246 746 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 VANGL2Q9ULK5 521 aa17.11■□□□□ 0.33
CCDC28A-202ENST00000611852 ATG2BQ96BY7 2078 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 TBC1D3BA6NDS4 549 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 ANTXRLA6NF34 631 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 RNF40O75150 1001 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 TMEM253P0C7T8 217 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 DESP17661 470 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 C5orf22Q49AR2 442 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 ACBD5Q5T8D3 534 aaPredicted RBP17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 C14orf80Q86SX3 495 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 TMTC1Q8IUR5 882 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 ZNF683Q8IZ20 524 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 ARFGAP1Q8N6T3 406 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 CCDC185Q8N715 623 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 DTWD2Q8NBA8 298 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 IGSF8Q969P0 613 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 NTAN1Q96AB6 310 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 RPRD1AQ96P16 312 aaPredicted RBP17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 SNX10Q9Y5X0 201 aa17.1■□□□□ 0.33
CCDC28A-202ENST00000611852 SOWAHDA6NJG2 315 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 LCA5LO95447 670 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 HLA-FP30511 346 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 TNFRSF4P43489 277 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 MTAPQ13126 283 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 RABGAP1LQ5R372 815 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 C10orf76Q5T2E6 689 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 TTC39BQ5VTQ0 682 aaPredicted RBP17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 SCYL2Q6P3W7 929 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 NUDT18Q6ZVK8 323 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 MFN1Q8IWA4 741 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 WFDC5Q8TCV5 224 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 IER2Q9BTL4 223 aa17.09■□□□□ 0.33
CCDC28A-202ENST00000611852 PRRT4C9JH25 899 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 LUC7L3O95232 432 aaKnown RBP17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CHRM1P11229 460 aaPredicted RBP17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 KIR2DL1P43626 348 aaPredicted RBP17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 IRAK1P51617 712 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 NUBP1P53384 320 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 SEC13P55735 322 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 SCAPQ12770 1279 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 GEN1Q17RS7 908 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 ARTNQ5T4W7 220 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 PKN3Q6P5Z2 889 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 MAMSTRQ6ZN01 415 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 SLFN11Q7Z7L1 901 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CIR1Q86X95 450 aaPredicted RBP17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 TMEM139Q8IV31 216 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CARNMT1Q8N4J0 409 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 ZNF557Q8N988 423 aaPredicted RBP17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CCDC26Q8TAB7 109 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 FIBINQ8TAL6 211 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 USP33Q8TEY7 942 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 BTBD6Q96KE9 485 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 MAGEB5Q9BZ81 275 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 OSBPL2Q9H1P3 480 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CTTNBP2NLQ9P2B4 639 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 UVRAGQ9P2Y5 699 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 OR12D3Q9UGF7 316 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 ANAPC7Q9UJX3 599 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 CACNA1IQ9P0X4 2223 aa17.08■□□□□ 0.32
CCDC28A-202ENST00000611852 IGLV3-10A0A075B6K4 115 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 A0A1B0GVM2 712 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 TCAF2A6NFQ2 919 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 DRGXA6NNA5 263 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 GOLGA6L6A8MZA4 724 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 RNF8O76064 485 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 CYLC1P35663 651 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 AIF1P55008 147 aa17.07■□□□□ 0.32
CCDC28A-202ENST00000611852 CDH18Q13634 790 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms