RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CD40P25942 277 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 MPLP40238 635 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 IL15P40933 162 aaPredicted RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 RPS9P46781 194 aaKnown RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 GPR15P49685 360 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 RAB27AP51159 221 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 APBA1Q02410 837 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ARHGAP1Q07960 439 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 FOXD4Q12950 439 aaPredicted RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ZNF460Q14592 562 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 SMC1AQ14683 1233 aaKnown RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 SLC44A4Q53GD3 710 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 MUM1L1Q5H9M0 696 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 CREB3L3Q68CJ9 461 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 SP5Q6BEB4 398 aaPredicted RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ARMC6Q6NXE6 501 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ESPNLQ6ZVH7 1005 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 MICALCLQ6ZW33 695 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 RASGRP2Q7LDG7 609 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 C14orf80Q86SX3 495 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 MRPL43Q8N983 215 aaKnown RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 LSM14AQ8ND56 463 aaKnown RBP4.95□□□□□ -1.62
LINC00540-201ENST00000611481 TTC8Q8TAM2 541 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 DYNLL2Q96FJ2 89 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 NEUROD6Q96NK8 337 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ARPC5LQ9BPX5 153 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 DUSP26Q9BV47 211 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 ZMAT4Q9H898 229 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 MCM9Q9NXL9 1143 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 EPS15L1Q9UBC2 864 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 LZTS1Q9Y250 596 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 FPGT-TNNI3KV9GXZ4 949 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 LCTP09848 1927 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 COL12A1Q99715 3063 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 DOCK8Q8NF50 2099 aa4.95□□□□□ -1.62
LINC00540-201ENST00000611481 COL6A6A6NMZ7 2263 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 FBN2P35556 2912 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GOLGA6CA6NDK9 693 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GOLGA6BA6NDN3 693 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 MARCH11A6NNE9 402 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 TBKBP1A7MCY6 615 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 FOSP01100 380 aaPredicted RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GH1P01241 217 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 FGAP02671 866 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 CLEC2LP0C7M8 214 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GOLGA6DP0CG33 693 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GP1BBP13224 206 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 CCR3P51677 355 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 NEK2P51955 445 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 NRG3P56975 720 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 SIM1P81133 766 aaPredicted RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 POU5F1BQ06416 359 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 RESTQ13127 1097 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 HTR4Q13639 388 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 BAATQ14032 418 aaPredicted RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 LRRC32Q14392 662 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 LPIN1Q14693 890 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 LY6KQ17RY6 165 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 UAP1L1Q3KQV9 507 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 CCDC178Q5BJE1 867 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 TMTC2Q8N394 836 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 AFAP1L2Q8N4X5 818 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 SVIPQ8NHG7 77 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GLG1Q92896 1179 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 FDXACB1Q9BRP7 624 aaPredicted RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 RPP25Q9BUL9 199 aaKnown RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 SFXN1Q9H9B4 322 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 CHST12Q9NRB3 414 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 VPS45Q9NRW7 570 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 GOLGA6AQ9NYA3 693 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 ZIM2Q9NZV7 527 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 ISY1Q9ULR0 285 aaKnown RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 PA2G4Q9UQ80 394 aaKnown RBP4.94□□□□□ -1.62
LINC00540-201ENST00000611481 NUMBLQ9Y6R0 609 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 C2orf16Q68DN1 1984 aa4.94□□□□□ -1.62
LINC00540-201ENST00000611481 FBN3Q75N90 2809 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.93□□□□□ -1.62
LINC00540-201ENST00000611481 A0A1W2PR48 441 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 GSG1L2A8MUP6 293 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 AKAP10O43572 662 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SLC28A2O43868 658 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CXCL14O95715 111 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 IGLV2-14P01704 120 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CHRNA1P02708 482 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ITGAMP11215 1152 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SCG2P13521 617 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CALML3P27482 149 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 RDXP35241 583 aaKnown RBP4.93□□□□□ -1.62
LINC00540-201ENST00000611481 PBX3P40426 434 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ABCG1P45844 678 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CSRP3P50461 194 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SNAP25P60880 206 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SATB1Q01826 763 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 KRT17Q04695 432 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 KLRC3Q07444 240 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CDCA2Q69YH5 1023 aaPredicted RBP4.93□□□□□ -1.62
LINC00540-201ENST00000611481 TPRG1Q6ZUI0 275 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 LONP2Q86WA8 852 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 UBR7Q8N806 425 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SLC22A17Q8WUG5 538 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms