RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PPARGC1AQ9UBK2 798 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-219ENST00000599575 OR12D3Q9UGF7 316 aa17.12■□□□□ 0.33
SHKBP1-219ENST00000599575 IGLV3-10A0A075B6K4 115 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 A0A1B0GVM2 712 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 TCAF2A6NFQ2 919 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 DRGXA6NNA5 263 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 GPR37L1O60883 481 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 CLDN11O75508 207 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 SLC6A4P31645 630 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 L1CAMP32004 1257 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 OPRD1P41143 372 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 ATXN1P54253 815 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 KIF5AQ12840 1032 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 LRRC32Q14392 662 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 IFI16Q16666 785 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 ERMARDQ5T6L9 678 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 RAP1GAP2Q684P5 730 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 FBXL22Q6P050 247 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 SCYL2Q6P3W7 929 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 CHST9Q7L1S5 443 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 KIAA1328Q86T90 577 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 LGI2Q8N0V4 545 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 KCNV2Q8TDN2 545 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 TEKT4Q8WW24 435 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 RPRD1AQ96P16 312 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 TRIM7Q9C029 511 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 TBC1D17Q9HA65 648 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 LTB4R2Q9NPC1 389 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 XPO7Q9UIA9 1087 aaKnown RBP17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 USP18Q9UMW8 372 aa17.11■□□□□ 0.33
SHKBP1-219ENST00000599575 COL4A2P08572 1712 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 GOLGA6L7A0A1B0GV03 622 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 SHISA7A6NL88 538 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 TIMM44O43615 452 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 TULP3O75386 442 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 HOXD9P28356 352 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 MIPP30301 263 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 TNFRSF4P43489 277 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 RPS9P46781 194 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 SOX9P48436 509 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 DGKGP49619 791 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 GALK1P51570 392 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 CCDC173Q0VFZ6 552 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 SLC12A1Q13621 1099 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 EIF4HQ15056 248 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 GRAMD4Q6IC98 578 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 RFWD3Q6PCD5 774 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 FIBINQ8TAL6 211 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 TTC8Q8TAM2 541 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 CHFRQ96EP1 664 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 EPAS1Q99814 870 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 TSGA10Q9BZW7 698 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 SIK2Q9H0K1 926 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 OSGEPQ9NPF4 335 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 ARHGEF4Q9NR80 690 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 DNAJC17Q9NVM6 304 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 FZD10Q9ULW2 581 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 REXO2Q9Y3B8 237 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 SIT1Q9Y3P8 196 aa17.1■□□□□ 0.33
SHKBP1-219ENST00000599575 PRR33A8MZF0 331 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 I6L893 689 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 TSPAN3O60637 253 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 TBL1XO60907 577 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 APODP05090 189 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 PTMAP06454 111 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 KRT7P08729 469 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 NOP2P46087 812 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 VCPP55072 806 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 CDH4P55283 916 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 IER5LQ5T953 404 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 LRRC38Q5VT99 294 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 TXNDC11Q6PKC3 985 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ZNF662Q6ZS27 426 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 POLNQ7Z5Q5 900 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ZNF683Q8IZ20 524 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ZNF687Q8N1G0 1237 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ARFGAP1Q8N6T3 406 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 CCDC185Q8N715 623 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 PJA1Q8NG27 643 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 WFIKKN2Q8TEU8 576 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 PBXIP1Q96AQ6 731 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 CLDN23Q96B33 292 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 PRICKLE1Q96MT3 831 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ZYG11BQ9C0D3 744 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 EPHX3Q9H6B9 360 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ANLNQ9NQW6 1124 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 VANGL2Q9ULK5 521 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 ADGRG1Q9Y653 693 aa17.09■□□□□ 0.33
SHKBP1-219ENST00000599575 FAM170BA6NMN3 283 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 E9PAM4 449 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 STK25O00506 426 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 NPC1O15118 1278 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 LUC7L3O95232 432 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 KAT7O95251 611 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 CCDC175P0C221 793 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 CISD3P0C7P0 127 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 AOC1P19801 751 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 HCAR3P49019 387 aa17.08■□□□□ 0.32
SHKBP1-219ENST00000599575 NUBP1P53384 320 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms