RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 NMUR1Q9HB89 426 aa14.9□□□□□ -0.02
VRK3-217ENST00000599538 HMX1Q9NP08 348 aaPredicted RBP14.9□□□□□ -0.02
VRK3-217ENST00000599538 PNPLA8Q9NP80 782 aa14.9□□□□□ -0.02
VRK3-217ENST00000599538 ABI2Q9NYB9 513 aaPredicted RBP14.9□□□□□ -0.02
VRK3-217ENST00000599538 SENP1Q9P0U3 644 aa14.9□□□□□ -0.02
VRK3-217ENST00000599538 SLC17A7Q9P2U7 560 aa14.9□□□□□ -0.02
VRK3-217ENST00000599538 GGT7Q9UJ14 662 aa14.9□□□□□ -0.02
VRK3-217ENST00000599538 SF3B1O75533 1304 aaKnown RBP eCLIP14.9□□□□□ -0.023e-6■■■■■ 137.9
VRK3-217ENST00000599538 ATXN2Q99700 1313 aaKnown RBP14.9□□□□□ -0.02
VRK3-217ENST00000599538 CPP00450 1065 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 F9P00740 461 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 OAS1P00973 400 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 IGLV3-25P01717 112 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 EPHB2P29323 1055 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 AIF1P55008 147 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 EIF4EBP2Q13542 120 aaPredicted RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 YTHDF3Q7Z739 585 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 SCN4BQ8IWT1 228 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 TTC9BQ8N6N2 239 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 TSEN34Q9BSV6 310 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 CFHR5Q9BXR6 569 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SLCO1B3Q9NPD5 702 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 OSER1Q9NX31 292 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SAMD15Q9P1V8 674 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SMG5Q9UPR3 1016 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 PATJQ8NI35 1801 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 WDR27A2RRH5 827 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 ARVCFO00192 962 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 DNM1LO00429 736 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 CSH1P0DML2 217 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 CSH2P0DML3 217 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 PRKCHP24723 683 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 HTRA3P83110 453 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 IL9RQ01113 521 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 DNAJC3Q13217 504 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SMAD1Q15797 465 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 DDR2Q16832 855 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 ARL13BQ3SXY8 428 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SH2D5Q6ZV89 423 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 LRRC8DQ7L1W4 858 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 PID1Q7Z2X4 250 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 BANPQ8N9N5 519 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 DBF4BQ8NFT6 615 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 TCP10LQ8TDR4 215 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 CCT6BQ92526 530 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 CASP10Q92851 521 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 RNF34Q969K3 372 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 CELF6Q96J87 481 aaKnown RBP14.89□□□□□ -0.03
VRK3-217ENST00000599538 SIK2Q9H0K1 926 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 RRN3Q9NYV6 651 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 SLC17A6Q9P2U8 582 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 NEU3Q9UQ49 428 aa14.89□□□□□ -0.03
VRK3-217ENST00000599538 PPP1R12AO14974 1030 aaPredicted RBP14.88□□□□□ -0.03
VRK3-217ENST00000599538 OPHN1O60890 802 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 SPAG6O75602 509 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 APOEP02649 317 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 INHBAP08476 426 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 SRGAP2BP0DMP2 458 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 ADRA1DP25100 572 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 PTPN3P26045 913 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 GRK4P32298 578 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 FDFT1P37268 417 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 SESN2P58004 480 aaPredicted RBP14.88□□□□□ -0.03
VRK3-217ENST00000599538 MAPRE1Q15691 268 aaKnown RBP14.88□□□□□ -0.03
VRK3-217ENST00000599538 ARTNQ5T4W7 220 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 LVRNQ6Q4G3 990 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 GPR152Q8TDT2 470 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 SH3TC2Q8TF17 1288 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 ARNTL2Q8WYA1 636 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 AGAP3Q96P47 875 aa14.88□□□□□ -0.03
VRK3-217ENST00000599538 IRAK2O43187 625 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 USP12O75317 370 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 MGAT1P26572 445 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 HCAR3P49019 387 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 SLC18A1P54219 525 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 ZBTB17Q13105 803 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 BMPR2Q13873 1038 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 LRRC6Q86X45 466 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 CEP57Q86XR8 500 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 SCML4Q8N228 414 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 LRRC39Q96DD0 335 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 THOC1Q96FV9 657 aaKnown RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 OXNAD1Q96HP4 312 aaPredicted RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 NSRP1Q9H0G5 558 aaKnown RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 ZCWPW1Q9H0M4 648 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 PRDM16Q9HAZ2 1276 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 A0A1W2PQH9 124 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 WDR91A4D1P6 747 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 ZBTB24O43167 697 aaPredicted RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 SOAT2O75908 522 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 OAZ2O95190 189 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 MT-ND3P03897 115 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 PYGBP11216 843 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 CD68P34810 354 aaPredicted RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 PBX3P40426 434 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 MAGEA9P43362 315 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 USP46P62068 366 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 PPIDQ08752 370 aaKnown RBP14.87□□□□□ -0.03
VRK3-217ENST00000599538 PARP6Q2NL67 630 aa14.87□□□□□ -0.03
VRK3-217ENST00000599538 BTBD8Q5XKL5 378 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms