RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 IRX2Q9BZI1 471 aaPredicted RBP13.54□□□□□ -0.24
LIG1-212ENST00000596549 LHX5Q9H2C1 402 aa13.54□□□□□ -0.24
LIG1-212ENST00000596549 PRDM16Q9HAZ2 1276 aa13.54□□□□□ -0.24
LIG1-212ENST00000596549 FSCN3Q9NQT6 498 aa13.54□□□□□ -0.24
LIG1-212ENST00000596549 STIM2Q9P246 746 aa13.54□□□□□ -0.24
LIG1-212ENST00000596549 FAM170AA1A519 330 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 C4orf47A7E2U8 309 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 KHNYNO15037 678 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 DAB1O75553 588 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 GRAP2O75791 330 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 APOEP02649 317 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 EPHX1P07099 455 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 C7P10643 843 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 EEF1GP26641 437 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 CDH5P33151 784 aaPredicted RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 KLK7P49862 253 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 CAMK2GQ13555 558 aaPredicted RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 RAPGEF1Q13905 1077 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 DRAP1Q14919 205 aaPredicted RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 NUMA1Q14980 2115 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 DCAF6Q58WW2 860 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 ZC3H12AQ5D1E8 599 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 FSCBQ5H9T9 825 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 KLHDC7AQ5VTJ3 777 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 RAP1GAP2Q684P5 730 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 MMS22LQ6ZRQ5 1243 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 METTL3Q86U44 580 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 CHSY1Q86X52 802 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 CFAP52Q8N1V2 620 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 ENOX1Q8TC92 643 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 DDX1Q92499 740 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 PRMT1Q99873 361 aaKnown RBP13.53□□□□□ -0.24
LIG1-212ENST00000596549 GANQ9H2C0 597 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 ASNSD1Q9NWL6 643 aa13.53□□□□□ -0.24
LIG1-212ENST00000596549 F8VZ95 297 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 HSF2BPO75031 334 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 LUC7L3O95232 432 aaKnown RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 IGLV3-19P01714 112 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 GLI1P08151 1106 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 UCHL3P15374 230 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 CYP11B1P15538 503 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 ENGP17813 658 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 TACR2P21452 398 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 HOXD12P35452 270 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 TPMTP51580 245 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 ARID5AQ03989 594 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 KRT31Q15323 416 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 FNDC3BQ53EP0 1204 aaKnown RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 CT47A1Q5JQC4 288 aaPredicted RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 SLC23A3Q6PIS1 610 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 SLC26A9Q7LBE3 791 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 CIR1Q86X95 450 aaPredicted RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 TMPRSS6Q8IU80 811 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 CARNMT1Q8N4J0 409 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 OR2T3Q8NH03 318 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 FIBINQ8TAL6 211 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 TOE1Q96GM8 510 aaKnown RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 BTN2A3PQ96KV6 586 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 MRGPRX3Q96LB0 322 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 GBP4Q96PP9 640 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 MTG2Q9H4K7 406 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 FAM204AQ9H8W3 233 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 ITM2CQ9NQX7 267 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 DDIT4Q9NX09 232 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 WSB2Q9NYS7 404 aaPredicted RBP13.52□□□□□ -0.25
LIG1-212ENST00000596549 NCOR2Q9Y618 2525 aa13.52□□□□□ -0.25
LIG1-212ENST00000596549 SYNJ2BP-COX16A0A087WUM0 186 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 KCNU1A8MYU2 1149 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 PES1O00541 588 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 EPHB6O15197 1021 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 ZBTB24O43167 697 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 TIMM44O43615 452 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 SYNCRIPO60506 623 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 DLDP09622 509 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 TFE3P19532 575 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 KCNA4P22459 653 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 CD6P30203 668 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 KRT9P35527 623 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 GGCXP38435 758 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 CSKP41240 450 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 IRAK1P51617 712 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 CDH18Q13634 790 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 PITRM1Q5JRX3 1037 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 OR6B2Q6IFH4 312 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 NOP9Q86U38 636 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 LGI2Q8N0V4 545 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 ZNF557Q8N988 423 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 ZNF397Q8NF99 534 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 EPS8L1Q8TE68 723 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 PRCCQ92733 491 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 TTC17Q96AE7 1141 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 SIPA1Q96FS4 1042 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 ZNF419Q96HQ0 510 aaPredicted RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 DDX50Q9BQ39 737 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 VPS16Q9H269 839 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 CAPN10Q9HC96 672 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 TMEM9BQ9NQ34 198 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 COX16Q9P0S2 106 aa13.51□□□□□ -0.25
LIG1-212ENST00000596549 ASCC3Q8N3C0 2202 aaKnown RBP13.51□□□□□ -0.25
LIG1-212ENST00000596549 CHD5Q8TDI0 1954 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms