RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	CXCR3	P49682	368 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ARPP19	P56211	112 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	USP46	P62068	366 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	IFRD2	Q12894	506 aa	Predicted RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	SEMA3B	Q13214	749 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	LBR	Q14739	615 aa	Known RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	KCNT2	Q6UVM3	1135 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	NUP93	Q8N1F7	819 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	CFAP61	Q8NHU2	1237 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	TSC22D3	Q99576	134 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	STMN4	Q9H169	189 aa	Predicted RBP	15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	NMUR1	Q9HB89	426 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	ETNK2	Q9NVF9	386 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	OSER1	Q9NX31	292 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	SCML2	Q9UQR0	700 aa		15.9	■□□□□ 0.14
DDX39A-209	ENST00000589318	FAM92A	A1XBS5	289 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	SGK1	O00141	431 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	AIF1	P55008	147 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	SLC10A2	Q12908	348 aa	Predicted RBP	15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	P3H1	Q32P28	736 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	KRT71	Q3SY84	523 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	NCBP2-AS2	Q69YL0	99 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	SLC8B1	Q6J4K2	584 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM117B	Q6P1L5	589 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	TBC1D1	Q86TI0	1168 aa	Predicted RBP	15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	LMNTD2	Q8IXW0	634 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	SPPL2B	Q8TCT7	592 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	RNF139	Q8WU17	664 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	UBLCP1	Q8WVY7	318 aa	Predicted RBP	15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	DTNBP1	Q96EV8	351 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	PGM2	Q96G03	612 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	TRIM62	Q9BVG3	475 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	TMEM106C	Q9BVX2	250 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	OXCT2	Q9BYC2	517 aa	Predicted RBP	15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARHGEF4	Q9NR80	690 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	ABCC13	Q9NSE7	274 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	MTRR	Q9UBK8	725 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	MTRF1L	Q9UGC7	380 aa	Known RBP	15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	SLC27A5	Q9Y2P5	690 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	ATP8A1	Q9Y2Q0	1164 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	MFHAS1	Q9Y4C4	1052 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	CDY1	Q9Y6F8	540 aa		15.89	■□□□□ 0.13
DDX39A-209	ENST00000589318	TTC36	A6NLP5	189 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	ENO4	A6NNW6	628 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM72C	H0Y354	149 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	F9	P00740	461 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	AMPD1	P23109	780 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	CHKA	P35790	457 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	SKIV2L2	P42285	1042 aa	Known RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	GBE1	Q04446	702 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	USP41	Q3LFD5	358 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	EFHC2	Q5JST6	749 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM72A	Q5TYM5	149 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	IZUMO3	Q5VZ72	239 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM72D	Q6L9T8	149 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	ZC3H18	Q86VM9	953 aa	Known RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	FAM72B	Q86X60	149 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	SLC39A11	Q8N1S5	342 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	FBXO22	Q8NEZ5	403 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	USP29	Q9HBJ7	922 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	PAPOLB	Q9NRJ5	636 aa	Known RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	HEY1	Q9Y5J3	304 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318		A0A1W2PQH9	124 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	WDR27	A2RRH5	827 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	DNALI1	O14645	258 aa	Predicted RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	IRAK2	O43187	625 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	EFCAB14	O75071	495 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	MAP3K6	O95382	1288 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	IFNB1	P01574	187 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	MMP13	P45452	471 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	NRL	P54845	237 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	SMARCB1	Q12824	385 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	GPS1	Q13098	491 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	DPYS	Q14117	519 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	UBAP2	Q5T6F2	1119 aa	Known RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	GALNT15	Q8N3T1	639 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	TMEM199	Q8N511	208 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	GPR152	Q8TDT2	470 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	SMOC2	Q9H3U7	446 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	ANAPC5	Q9UJX4	755 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	BACE2	Q9Y5Z0	518 aa		15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	MRPL42	Q9Y6G3	142 aa	Known RBP	15.88	■□□□□ 0.13
DDX39A-209	ENST00000589318	NUDT17	P0C025	328 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	LINGO3	P0C6S8	592 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	HAPLN1	P10915	354 aa	Predicted RBP	15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	RPL17	P18621	184 aa	Known RBP	15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	RPL22	P35268	128 aa	Known RBP	15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	ARL4A	P40617	200 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	ROR1	Q01973	937 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	CAV1	Q03135	178 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	DUSP4	Q13115	394 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	PSMD5	Q16401	504 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	ANKRD20A2	Q5SQ80	823 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	ANKRD20A1	Q5TYW2	823 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	ANKRD20A3	Q5VUR7	823 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	BTBD8	Q5XKL5	378 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	C16orf59	Q7L2K0	433 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	MON1A	Q86VX9	555 aa		15.87	■□□□□ 0.13
DDX39A-209	ENST00000589318	CMTR2	Q8IYT2	770 aa	Known RBP	15.87	■□□□□ 0.13

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms