RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 GDPD2Q9HCC8 539 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 PRSS16Q9NQE7 514 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 TM7SF3Q9NS93 570 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 ABCB8Q9NUT2 735 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 GGA2Q9UJY4 613 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 APOBEC2Q9Y235 224 aaKnown RBP11.04□□□□□ -0.64
RFFL-209ENST00000581265 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.04□□□□□ -0.64
RFFL-209ENST00000581265 ACACAQ13085 2346 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 DMXL2Q8TDJ6 3036 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 KNTC1P50748 2209 aa11.04□□□□□ -0.64
RFFL-209ENST00000581265 NBEAQ8NFP9 2946 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 TK2O00142 265 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 IRAK2O43187 625 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 MSI1O43347 362 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 SMC2O95347 1197 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 LCP1P13796 627 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 PLA2G2AP14555 144 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 SLC11A2P49281 568 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 FMO5P49326 533 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 CSNK1EP49674 416 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 RPS14P62263 151 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 LRMPQ12912 555 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 FNDC3BQ53EP0 1204 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 NUGGCQ68CJ6 796 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 MBLAC2Q68D91 279 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 TMEM270Q6UE05 265 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 FAM124AQ86V42 546 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 CACUL1Q86Y37 369 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 ZNF557Q8N988 423 aaPredicted RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 ENGASEQ8NFI3 743 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 BAHD1Q8TBE0 780 aaPredicted RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 SETD7Q8WTS6 366 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 LMLNQ96KR4 655 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 HSFY1Q96LI6 401 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 ZSWIM1Q9BR11 485 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 C6orf106Q9H6K1 298 aaPredicted RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 METTL14Q9HCE5 456 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 SUN2Q9UH99 717 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 FNDC3AQ9Y2H6 1198 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 SLCO1B1Q9Y6L6 691 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 ASH1LQ9NR48 2969 aaKnown RBP11.03□□□□□ -0.64
RFFL-209ENST00000581265 ITPR1Q14643 2758 aa11.03□□□□□ -0.64
RFFL-209ENST00000581265 APC2O95996 2303 aa11.02□□□□□ -0.64
RFFL-209ENST00000581265 A0A1B0GVT2 93 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 RNF225M0QZC1 329 aaPredicted RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 FLRT2O43155 660 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 ACSL4O60488 711 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 DKK1O94907 266 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 SEMA4FO95754 770 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 LTFP02788 710 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 POLR2EP19388 210 aaKnown RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 CD27P26842 260 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 CD70P32970 193 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 SGSHP51688 502 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 SUZ12Q15022 739 aaKnown RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 STILQ15468 1287 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 KIF19Q2TAC6 998 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 FAM133BQ5BKY9 247 aaKnown RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 RFWD3Q6PCD5 774 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 ZNF366Q8N895 744 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 FIBINQ8TAL6 211 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 LMO3Q8TAP4 145 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 GOLGA1Q92805 767 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 TTC17Q96AE7 1141 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 BIRC7Q96CA5 298 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 DHTKD1Q96HY7 919 aaPredicted RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 NT5C1BQ96P26 610 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 CDC6Q99741 560 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 BTBD1Q9H0C5 482 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 RSPH9Q9H1X1 276 aaPredicted RBP11.02□□□□□ -0.65
RFFL-209ENST00000581265 SGK2Q9HBY8 427 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.02□□□□□ -0.65
RFFL-209ENST00000581265 PCDHB4Q9Y5E5 795 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 RAI2Q9Y5P3 530 aa11.02□□□□□ -0.65
RFFL-209ENST00000581265 GOLGA4Q13439 2230 aaKnown RBP11.01□□□□□ -0.65
RFFL-209ENST00000581265 GOLGA6L7A0A1B0GV03 622 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TRIM49BA6NDI0 452 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 P4HA2O15460 535 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TBL1XO60907 577 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 FBXO21O94952 628 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 DNTTP04053 509 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 FYNP06241 537 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 SLC6A4P31645 630 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 GRIA4P48058 902 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 RPL34P49207 117 aaKnown RBP11.01□□□□□ -0.65
RFFL-209ENST00000581265 RGS7P49802 495 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TBX4P57082 545 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 ARID5BQ14865 1188 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TEAD4Q15561 434 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 USP30Q70CQ3 517 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TMPRSS7Q7RTY8 843 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 KDM1BQ8NB78 822 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 WFDC5Q8TCV5 224 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 RHBDD1Q8TEB9 315 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 SMARCE1Q969G3 411 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 MYO19Q96H55 970 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 CEP63Q96MT8 703 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 TIGD1Q96MW7 591 aa11.01□□□□□ -0.65
RFFL-209ENST00000581265 DDX50Q9BQ39 737 aaKnown RBP11.01□□□□□ -0.65
RFFL-209ENST00000581265 ORAI3Q9BRQ5 295 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms