RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 FAM71AQ8IYT1 594 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 IL17RCQ8NAC3 791 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 NEK11Q8NG66 645 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 WFIKKN2Q8TEU8 576 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 TMA16Q96EY4 203 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 TPSD1Q9BZJ3 242 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 CIPCQ9C0C6 399 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 POLR3BQ9NW08 1133 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 ASNSD1Q9NWL6 643 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 TJP2Q9UDY2 1190 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 LIMA1Q9UHB6 759 aaKnown RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 STOML2Q9UJZ1 356 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 AJAP1Q9UKB5 411 aaPredicted RBP8.42□□□□□ -1.06
VPS53-214ENST00000572607 NAALADL1Q9UQQ1 740 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 TLR6Q9Y2C9 796 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 SLC27A6Q9Y2P4 619 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 MYH10P35580 1976 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 WDFY3Q8IZQ1 3526 aa8.42□□□□□ -1.06
VPS53-214ENST00000572607 CNOT1A5YKK6 2376 aaKnown RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 EML5Q05BV3 1969 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 DCDC2BA2VCK2 349 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 F8VZ95 297 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 GFRA2O00451 464 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 TRIM24O15164 1050 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 TIMM44O43615 452 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 LRP3O75074 770 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 TRUB2O95900 331 aaKnown RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 MOCS2O96007 188 aaPredicted RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 IGLV3-27P01718 113 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ADRB1P08588 477 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 CISD3P0C7P0 127 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 SLC2A3P11169 496 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ABCB4P21439 1286 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 SDHBP21912 280 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 STAT1P42224 750 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 WASP42768 502 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 POLR2FP61218 127 aaKnown RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 TPM4P67936 248 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 LMNB2Q03252 620 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 UBXN1Q04323 297 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 MESP2Q0VG99 397 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 MTA1Q13330 715 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ANO6Q4KMQ2 910 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 DCAF6Q58WW2 860 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 EMC10Q5UCC4 262 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 TAF3Q5VWG9 929 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 EGFLAMQ63HQ2 1017 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 TAC4Q86UU9 113 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 RASSF3Q86WH2 238 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ZNF677Q86XU0 584 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 SFTPA1Q8IWL2 248 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 AOPEPQ8N6M6 819 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ATP6V0D2Q8N8Y2 350 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 HJURPQ8NCD3 748 aaPredicted RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 MDGA1Q8NFP4 955 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ADAM32Q8TC27 787 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 HMGB4Q8WW32 186 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 RNF34Q969K3 372 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 AZIN2Q96A70 460 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 LOXL4Q96JB6 756 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 CPXM1Q96SM3 734 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 BPIFA3Q9BQP9 254 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 ZDHHC4Q9NPG8 344 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 FAM207AQ9NSI2 230 aaPredicted RBP8.41□□□□□ -1.06
VPS53-214ENST00000572607 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS53-214ENST00000572607 TMEM63CQ9P1W3 806 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 CYTH4Q9UIA0 394 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 FBXO10Q9UK96 956 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 STAP1Q9ULZ2 295 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 CACNA1GO43497 2377 aa8.41□□□□□ -1.06
VPS53-214ENST00000572607 SYNJ2BP-COX16A0A087WUM0 186 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 LGALS16A8MUM7 142 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 PRR5-ARHGAP8B1AHC4 643 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 PRRT4C9JH25 899 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 F5H5T6 163 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SYNCRIPO60506 623 aaKnown RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 TBL1XO60907 577 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 ADAM23O75077 832 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 DAB1O75553 588 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 GFPT2O94808 682 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 EPN2O95208 641 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 LSM8O95777 96 aaKnown RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 ERBB2P04626 1255 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 HNRNPLP14866 589 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS53-214ENST00000572607 HOXD9P28356 352 aaPredicted RBP8.4□□□□□ -1.06
VPS53-214ENST00000572607 HOXC13P31276 330 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SOX5P35711 763 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 ARHGAP8P85298 464 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SLC6A3Q01959 620 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SPEM2Q0P670 501 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 GEN1Q17RS7 908 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 PTPN20Q4JDL3 420 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 FILIP1LQ4L180 1135 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 MPP7Q5T2T1 576 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 LCE2CQ5TA81 110 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SYPL2Q5VXT5 272 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 OLFML1Q6UWY5 402 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 FAM183BPQ6ZVS7 135 aa8.4□□□□□ -1.06
VPS53-214ENST00000572607 SND1Q7KZF4 910 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS53-214ENST00000572607 KBTBD6Q86V97 674 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms