RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RGS7P49802 495 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ATXN3P54252 364 aaPredicted RBP7□□□□□ -1.29
VPS53-213ENST00000572334 RPS14P62263 151 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 FKBP3Q00688 224 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 TRIP6Q15654 476 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 CNGA2Q16280 664 aa7□□□□□ -1.29
VPS53-213ENST00000572334 MPPE1Q53F39 396 aa7□□□□□ -1.29
VPS53-213ENST00000572334 KCNT1Q5JUK3 1230 aa7□□□□□ -1.29
VPS53-213ENST00000572334 WDR45BQ5MNZ6 344 aa7□□□□□ -1.29
VPS53-213ENST00000572334 SYCP2LQ5T4T6 812 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ADGRF1Q5T601 910 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PIK3R6Q5UE93 754 aa7□□□□□ -1.29
VPS53-213ENST00000572334 TCERG1LQ5VWI1 586 aa7□□□□□ -1.29
VPS53-213ENST00000572334 TTI2Q6NXR4 508 aa7□□□□□ -1.29
VPS53-213ENST00000572334 RFWD3Q6PCD5 774 aa7□□□□□ -1.29
VPS53-213ENST00000572334 CHST9Q7L1S5 443 aa7□□□□□ -1.29
VPS53-213ENST00000572334 RSRC2Q7L4I2 434 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 NAXDQ8IW45 347 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ARHGEF19Q8IW93 802 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PNPLA1Q8N8W4 532 aa7□□□□□ -1.29
VPS53-213ENST00000572334 OR2T3Q8NH03 318 aa7□□□□□ -1.29
VPS53-213ENST00000572334 UCMAQ8WVF2 138 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ZCCHC14Q8WYQ9 949 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 PRCCQ92733 491 aaPredicted RBP7□□□□□ -1.29
VPS53-213ENST00000572334 SLC39A13Q96H72 371 aa7□□□□□ -1.29
VPS53-213ENST00000572334 FCRL2Q96LA5 508 aaPredicted RBP7□□□□□ -1.29
VPS53-213ENST00000572334 MRGPRX3Q96LB0 322 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PRICKLE1Q96MT3 831 aaPredicted RBP7□□□□□ -1.29
VPS53-213ENST00000572334 KREMEN1Q96MU8 473 aa7□□□□□ -1.29
VPS53-213ENST00000572334 GSDMAQ96QA5 445 aa7□□□□□ -1.29
VPS53-213ENST00000572334 NUP58Q9BVL2 599 aa7□□□□□ -1.29
VPS53-213ENST00000572334 CIPCQ9C0C6 399 aa7□□□□□ -1.29
VPS53-213ENST00000572334 LRRC4Q9HBW1 653 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PRSS16Q9NQE7 514 aa7□□□□□ -1.29
VPS53-213ENST00000572334 CNGB3Q9NQW8 809 aa7□□□□□ -1.29
VPS53-213ENST00000572334 ABCC13Q9NSE7 274 aa7□□□□□ -1.29
VPS53-213ENST00000572334 OLA1Q9NTK5 396 aaKnown RBP7□□□□□ -1.29
VPS53-213ENST00000572334 ABCB8Q9NUT2 735 aa7□□□□□ -1.29
VPS53-213ENST00000572334 CHMP5Q9NZZ3 219 aa7□□□□□ -1.29
VPS53-213ENST00000572334 SUSD2Q9UGT4 822 aa7□□□□□ -1.29
VPS53-213ENST00000572334 GGA2Q9UJY4 613 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PCOLCE2Q9UKZ9 415 aa7□□□□□ -1.29
VPS53-213ENST00000572334 STRIP2Q9ULQ0 834 aa7□□□□□ -1.29
VPS53-213ENST00000572334 WDR3Q9UNX4 943 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-213ENST00000572334 BTBD3Q9Y2F9 522 aa7□□□□□ -1.29
VPS53-213ENST00000572334 PTPRQQ9UMZ3 2332 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 A0A1B0GVT2 93 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 MEI4A8MW99 385 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 PPP1R3GB7ZBB8 358 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 H0Y626 953 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 BCAT2O15382 392 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 ZBTB24O43167 697 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 ACSL4O60488 711 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 SYNCRIPO60506 623 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 TRIM16O95361 564 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 CYBBP04839 570 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 IGHV4-34P06331 123 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 PAEPP09466 180 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 PABPC1P11940 636 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 CD19P15391 556 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 GNSP15586 552 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 TBXAS1P24557 533 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 OXTRP30559 389 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 GPD2P43304 727 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 HARS2P49590 506 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 LRRC63Q05C16 580 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 EIF4EBP2Q13542 120 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 HNRNPDQ14103 355 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 ZNF423Q2M1K9 1284 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 KIF19Q2TAC6 998 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 HLA-BQ31612 363 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 FSCBQ5H9T9 825 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 MPP7Q5T2T1 576 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 MBLAC2Q68D91 279 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 ISM2Q6H9L7 571 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 TMEM270Q6UE05 265 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 LAYNQ6UX15 382 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 SERPINA13PQ6UXR4 307 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 CCNI2Q6ZMN8 369 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 FAM124AQ86V42 546 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 ZSCAN30Q86W11 494 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 WFIKKN2Q8TEU8 576 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 IRGQQ8WZA9 623 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 AZIN2Q96A70 460 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 TTC17Q96AE7 1141 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 TMA16Q96EY4 203 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 ZDHHC5Q9C0B5 715 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 NUCKS1Q9H1E3 243 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 MIR1-1HGQ9H1L0 117 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 LHX5Q9H2C1 402 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 GAREM1Q9H706 876 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 EBF2Q9HAK2 575 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 SERGEFQ9UGK8 458 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 ARMCX3Q9UH62 379 aaPredicted RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 CYTH4Q9UIA0 394 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 XPO7Q9UIA9 1087 aaKnown RBP6.99□□□□□ -1.29
VPS53-213ENST00000572334 MAN1B1Q9UKM7 699 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 KIAA1257Q9ULG3 409 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 CNTN6Q9UQ52 1028 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms