RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GRAMD4Q6IC98 578 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 UNQ6494/PRO21346Q6UXR6 183 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 CCDC73Q6ZRK6 1079 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 MICU3Q86XE3 530 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 TMEM151BQ8IW70 566 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 TRPV1Q8NER1 839 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 OR10H5Q8NGA6 315 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 RAX2Q96IS3 184 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 PIGSQ96S52 555 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 LRRC2Q9BYS8 371 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 TM6SF1Q9BZW5 370 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 SENP6Q9GZR1 1112 aaPredicted RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 GLT8D2Q9H1C3 349 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 CPVLQ9H3G5 476 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 MTG2Q9H4K7 406 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 GOLGA2P5Q9HBQ8 144 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 OBP2BQ9NPH6 170 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 KRT84Q9NSB2 600 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 KCMF1Q9P0J7 381 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 USP18Q9UMW8 372 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 EDARQ9UNE0 448 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 RABL2BQ9UNT1 228 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 Q9Y3F1 56 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 SNX14Q9Y5W7 946 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 NUMBLQ9Y6R0 609 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 FRMPD3Q5JV73 1810 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 TNRC18O15417 2968 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 KIAA1217Q5T5P2 1943 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 KLF18A0A0U1RQI7 1052 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 LGALS16A8MUM7 142 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 IPO5O00410 1097 aaKnown RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 NPC1O15118 1278 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 RTN3O95197 1032 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 KNG1P01042 644 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 CYP1A1P04798 512 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 LPLP06858 475 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 DESP17661 470 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 CHMP24386 653 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 EEF1GP26641 437 aaKnown RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 HPDP32754 393 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 TXKP42681 527 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 ARF3P61204 181 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 ARF1P84077 181 aaKnown RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 MTA1Q13330 715 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 DGKDQ16760 1214 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS53-212ENST00000572259 ARL13BQ3SXY8 428 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 KANK2Q63ZY3 851 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 HAUS3Q68CZ6 603 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 KCNV1Q6PIU1 500 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 Q6ZUG5 572 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 RUFY3Q7L099 469 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 CPOQ8IVL8 374 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 SAMD14Q8IZD0 417 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 FBXL16Q8N461 479 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 SCFD2Q8WU76 684 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 PIBF1Q8WXW3 757 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 N4BP2L2Q92802 583 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 ZNF566Q969W8 418 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 GLT1D1Q96MS3 346 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 QRSL1Q9H0R6 528 aaKnown RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 DEF6Q9H4E7 631 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 HAUS2Q9NVX0 235 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 ITGB1BP2Q9UKP3 347 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 C19orf53Q9UNZ5 99 aaPredicted RBP6.54□□□□□ -1.36
VPS53-212ENST00000572259 ZNF711Q9Y462 761 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 DNAH12Q6ZR08 3092 aa6.54□□□□□ -1.36
VPS53-212ENST00000572259 MYO9BQ13459 2157 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 A0A088AWK7 358 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 A0A0G2JNJ9 132 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 CYTH3O43739 400 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 NUAK1O60285 661 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 OPHN1O60890 802 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 STAM2O75886 525 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 CABYRO75952 493 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TMEM63AO94886 807 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 FSBPO95073 299 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 PGK1P00558 417 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 CPT1AP50416 773 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 METAP2P50579 478 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS53-212ENST00000572259 PDE6CP51160 858 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 HSD17B4P51659 736 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TPD52P55327 224 aaPredicted RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 ERV3-1Q14264 604 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 BECN1Q14457 450 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 ANKRD1Q15327 319 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 PRR31Q5SQ13 230 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 ARMC4Q5T2S8 1044 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 MBNL2Q5VZF2 373 aaKnown RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 TANGO2Q6ICL3 276 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 ABRAXAS1Q6UWZ7 409 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 SLC30A10Q6XR72 485 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TMTC3Q6ZXV5 915 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 KCNK18Q7Z418 384 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 MOGAT3Q86VF5 341 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 TTC30AQ86WT1 665 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 SRBD1Q8N5C6 995 aaKnown RBP6.53□□□□□ -1.36
VPS53-212ENST00000572259 CDYL2Q8N8U2 506 aa6.53□□□□□ -1.36
VPS53-212ENST00000572259 CCDC12Q8WUD4 166 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms