RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF557Q8N988 423 aaPredicted RBP17.8■□□□□ 0.44
CLN3-216ENST00000565316 NELFBQ8WX92 580 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 KREMEN1Q96MU8 473 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 CAMK1GQ96NX5 476 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 LHX5Q9H2C1 402 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 PRSS16Q9NQE7 514 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 KLK13Q9UKR3 277 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 ANKRD11Q6UB99 2663 aaPredicted RBP17.8■□□□□ 0.44
CLN3-216ENST00000565316 WDFY3Q8IZQ1 3526 aa17.8■□□□□ 0.44
CLN3-216ENST00000565316 GOLGA6L7A0A1B0GV03 622 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 TBL1XO60907 577 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 ATP5BP06576 529 aaKnown RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 ZNF883P0CG24 379 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 CD70P32970 193 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 RDXP35241 583 aaKnown RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 GPD2P43304 727 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 MARSP56192 900 aaKnown RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 NNTQ13423 1086 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 TRIP6Q15654 476 aaKnown RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 NADSYN1Q6IA69 706 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 KLHL10Q6JEL2 608 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 BEND5Q7L4P6 421 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 CACUL1Q86Y37 369 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 NAXDQ8IW45 347 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 FIBINQ8TAL6 211 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 GOLGA1Q92805 767 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 TTC17Q96AE7 1141 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 FCRL2Q96LA5 508 aaPredicted RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 MIR1-1HGQ9H1L0 117 aa17.79■□□□□ 0.44
CLN3-216ENST00000565316 EIF2B4Q9UI10 523 aaKnown RBP17.79■□□□□ 0.44
CLN3-216ENST00000565316 BICDL2A1A5D9 508 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 CBFA2T3O75081 653 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 GNA14O95837 355 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 POLR2EP19388 210 aaKnown RBP17.78■□□□□ 0.44
CLN3-216ENST00000565316 RPS14P62263 151 aaKnown RBP17.78■□□□□ 0.44
CLN3-216ENST00000565316 KCNH2Q12809 1159 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 MEA1Q16626 185 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 IL27RAQ6UWB1 636 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 FAM124AQ86V42 546 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 SCUBE3Q8IX30 993 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 ZNF366Q8N895 744 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 HJURPQ8NCD3 748 aaPredicted RBP17.78■□□□□ 0.44
CLN3-216ENST00000565316 DQX1Q8TE96 717 aaKnown RBP17.78■□□□□ 0.44
CLN3-216ENST00000565316 SLC39A13Q96H72 371 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 C6orf106Q9H6K1 298 aaPredicted RBP17.78■□□□□ 0.44
CLN3-216ENST00000565316 OSGEPQ9NPF4 335 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 SUN2Q9UH99 717 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 TLR6Q9Y2C9 796 aa17.78■□□□□ 0.44
CLN3-216ENST00000565316 SART1O43290 800 aaKnown RBP17.77■□□□□ 0.44
CLN3-216ENST00000565316 ACSL1P33121 698 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 DBX2Q6ZNG2 339 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 GLRX5Q86SX6 157 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 CHCHD4Q8N4Q1 142 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 STK32AQ8WU08 396 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 MYEOVQ96EZ4 313 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 MYO19Q96H55 970 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 PRICKLE1Q96MT3 831 aaPredicted RBP17.77■□□□□ 0.44
CLN3-216ENST00000565316 SERPINB11Q96P15 392 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 DDX50Q9BQ39 737 aaKnown RBP17.77■□□□□ 0.44
CLN3-216ENST00000565316 SLC4A5Q9BY07 1137 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 MIS12Q9H081 205 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 IL21RQ9HBE5 538 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.77■□□□□ 0.44
CLN3-216ENST00000565316 PCDHGB2Q9Y5G2 931 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 KNL1Q8NG31 2342 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 ITPR1Q14643 2758 aa17.77■□□□□ 0.44
CLN3-216ENST00000565316 FREM2Q5SZK8 3169 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 CER1O95813 267 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 AFPP02771 609 aaKnown RBP17.76■□□□□ 0.43
CLN3-216ENST00000565316 ACADSBP45954 432 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 ARID5BQ14865 1188 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 HLA-BQ31612 363 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 MFN1Q8IWA4 741 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 KDM1BQ8NB78 822 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 ADAMTS14Q8WXS8 1223 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 INTS2Q9H0H0 1204 aaKnown RBP17.76■□□□□ 0.43
CLN3-216ENST00000565316 RSPH9Q9H1X1 276 aaPredicted RBP17.76■□□□□ 0.43
CLN3-216ENST00000565316 GAREM1Q9H706 876 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 PCOLCE2Q9UKZ9 415 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 INTS6Q9UL03 887 aaKnown RBP17.76■□□□□ 0.43
CLN3-216ENST00000565316 CTNND2Q9UQB3 1225 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 NAALADL1Q9UQQ1 740 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 PCDHB9Q9Y5E1 797 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 SLCO1B1Q9Y6L6 691 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 NUMA1Q14980 2115 aa17.76■□□□□ 0.43
CLN3-216ENST00000565316 SEMA4FO95754 770 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 DNTTP04053 509 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 ASLP04424 464 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 FTH1P19P0C7X4 201 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 MATKP42679 507 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 AFF3P51826 1226 aaKnown RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 RPS24P62847 133 aaKnown RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 PAK1Q13153 545 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 HNRNPA1L2Q32P51 320 aaKnown RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 MS4A13Q5J8X5 152 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 ZNF776Q68DI1 518 aaPredicted RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 DENND1BQ6P3S1 775 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 TMEM110Q86TL2 294 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 MRGPRX3Q96LB0 322 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 SRRTQ9BXP5 876 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms