RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TIMP4Q99727 224 aa5.24□□□□□ -1.57
LINC00560-201ENST00000564593 DUSP26Q9BV47 211 aa5.24□□□□□ -1.57
LINC00560-201ENST00000564593 RNF26Q9BY78 433 aaPredicted RBP5.24□□□□□ -1.57
LINC00560-201ENST00000564593 TMEM160Q9NX00 188 aa5.24□□□□□ -1.57
LINC00560-201ENST00000564593 GAR1Q9NY12 217 aaKnown RBP5.24□□□□□ -1.57
LINC00560-201ENST00000564593 SH3BP4Q9P0V3 963 aa5.24□□□□□ -1.57
LINC00560-201ENST00000564593 PNMA2Q9UL42 364 aa5.24□□□□□ -1.57
LINC00560-201ENST00000564593 COPG1Q9Y678 874 aaKnown RBP5.24□□□□□ -1.57
LINC00560-201ENST00000564593 CYP3A7-CYP3A51PA0A087WV96 503 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 A0A087X1B8 175 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 H3BNC9 293 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 CYR61O00622 381 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 EPB41L2O43491 1005 aaKnown RBP5.23□□□□□ -1.57
LINC00560-201ENST00000564593 KAT7O95251 611 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 CYP3A7P24462 503 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 NDUFS1P28331 727 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 STAT6P42226 847 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 MAPK7Q13164 816 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 TMEM88Q6PEY1 159 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 VSTM1Q6UX27 236 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 KIAA1324Q6UXG2 1013 aaKnown RBP5.23□□□□□ -1.57
LINC00560-201ENST00000564593 SLC39A5Q6ZMH5 540 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 BBS12Q6ZW61 710 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 LAS2Q8IYD9 372 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 ANKRD44Q8N8A2 993 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 ADAMTS18Q8TE60 1221 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 FYTTD1Q96QD9 318 aaKnown RBP5.23□□□□□ -1.57
LINC00560-201ENST00000564593 REEP2Q9BRK0 252 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 ARHGAP39Q9C0H5 1083 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 SEMA5BQ9P283 1151 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 TLK1Q9UKI8 766 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 B3GNT3Q9Y2A9 372 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 HEMK1Q9Y5R4 338 aaPredicted RBP5.23□□□□□ -1.57
LINC00560-201ENST00000564593 LMTK3Q96Q04 1460 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 SPATA31A1Q5TZJ5 1347 aa5.23□□□□□ -1.57
LINC00560-201ENST00000564593 TCRBV5S1A1TA0A578 114 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 VWA3AA6NCI4 1184 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 SAC3D1A6NKF1 404 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 PRRT4C9JH25 899 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 BTBD19C9JJ37 291 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 H7C1Q1 480 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 J3KRW8 73 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 TSPAN3O60637 253 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 CSF1P09603 554 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ATF7P17544 494 aaPredicted RBP5.22□□□□□ -1.57
LINC00560-201ENST00000564593 DDIT3P35638 169 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 VPS41P49754 854 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 TUBP50607 506 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 VAMP2P63027 116 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 LARS2Q15031 903 aaKnown RBP5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ATG16L1Q676U5 607 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 AMIGO2Q86SJ2 522 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 MRGPRGQ86SM5 289 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 HEATR4Q86WZ0 1026 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 AMER2Q8N7J2 671 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 HTRA1Q92743 480 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 STAMQ92783 540 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 REPS1Q96D71 796 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 HVCN1Q96D96 273 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 HIC2Q96JB3 615 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 HTATIP2Q9BUP3 242 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 GPR63Q9BZJ6 419 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 PRDM16Q9HAZ2 1276 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ALG13Q9NP73 1137 aaKnown RBP5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ASNSD1Q9NWL6 643 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ASB6Q9NWX5 421 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 ADAM21Q9UKJ8 722 aa5.22□□□□□ -1.57
LINC00560-201ENST00000564593 TARM1B6A8C7 271 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 GRM8O00222 908 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 PRYO14603 147 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 KLK10O43240 276 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 CYP2D6P10635 497 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 ACP5P13686 325 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 IGFBP2P18065 325 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 WT1P19544 449 aaPredicted RBP5.21□□□□□ -1.57
LINC00560-201ENST00000564593 GPD1P21695 349 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 SFPQP23246 707 aaKnown RBP eCLIP5.21□□□□□ -1.57
LINC00560-201ENST00000564593 HOXD12P35452 270 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 ACVRL1P37023 503 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 PNPLA4P41247 253 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 SLC37A1P57057 533 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 CDK18Q07002 472 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 CBWD5Q5RIA9 395 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 OLFML1Q6UWY5 402 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.21□□□□□ -1.57
LINC00560-201ENST00000564593 LDLRAD3Q86YD5 345 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 ADPRHL1Q8NDY3 354 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 GPR78Q96P69 363 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 NPAS1Q99742 590 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 HERC2P3Q9BVR0 1158 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 SLC26A6Q9BXS9 759 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 CLPBQ9H078 707 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 KLK15Q9H2R5 256 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 UBN1Q9NPG3 1134 aa5.21□□□□□ -1.57
LINC00560-201ENST00000564593 A6NLC8 198 aa5.21□□□□□ -1.58
LINC00560-201ENST00000564593 UBE2Q2LH0YL09 131 aa5.21□□□□□ -1.58
LINC00560-201ENST00000564593 ANP32CO43423 234 aa5.21□□□□□ -1.58
LINC00560-201ENST00000564593 PROZP22891 400 aa5.21□□□□□ -1.58
LINC00560-201ENST00000564593 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.21□□□□□ -1.58
LINC00560-201ENST00000564593 DDX10Q13206 875 aaKnown RBP5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms