RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SGSHP51688 502 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 MMRN1Q13201 1228 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 KRT81Q14533 505 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 PDK2Q15119 407 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 PUS10Q3MIT2 529 aaKnown RBP17.14■□□□□ 0.33
VPS4A-202ENST00000562754 FBXL22Q6P050 247 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 SPOCD1Q6ZMY3 1216 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 MTSS1LQ765P7 747 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 LGI2Q8N0V4 545 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 CPXM2Q8N436 756 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 KIAA1958Q8N8K9 716 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 KCTD6Q8NC69 237 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 IGSF8Q969P0 613 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 ELSPBP1Q96BH3 223 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 RPGRIP1Q96KN7 1286 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 LINC00597Q9H2U6 94 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 CWC15Q9P013 229 aaKnown RBP17.14■□□□□ 0.33
VPS4A-202ENST00000562754 THEGQ9P2T0 379 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 VANGL2Q9ULK5 521 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 NUMBLQ9Y6R0 609 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 MYOFQ9NZM1 2061 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 IGLV3-10A0A075B6K4 115 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 CTAGE9A4FU28 777 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 F5H5T6 163 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 KCNK3O14649 394 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 CREB3O43889 395 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 IL4RP24394 825 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 CASQ1P31415 396 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 AMPD2Q01433 879 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 FCHO2Q0JRZ9 810 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 GRM2Q14416 872 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 TAZQ16635 292 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 PAPD7Q5XG87 772 aaKnown RBP17.13■□□□□ 0.33
VPS4A-202ENST00000562754 MFSD6LQ8IWD5 586 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 RCOR2Q8IZ40 523 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 RSAD2Q8WXG1 361 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 E2F7Q96AV8 911 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 FAF2Q96CS3 445 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 RBM41Q96IZ5 413 aaKnown RBP17.13■□□□□ 0.33
VPS4A-202ENST00000562754 ZFYVE19Q96K21 471 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 CSPG4P5Q96PW8 444 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 EPAS1Q99814 870 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF670Q9BS34 389 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 HERPUD2Q9BSE4 406 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 CALN1Q9BXU9 219 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 TBC1D14Q9P2M4 693 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 SNX12Q9UMY4 172 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 NR2E1Q9Y466 385 aa17.13■□□□□ 0.33
VPS4A-202ENST00000562754 SPTBN5Q9NRC6 3674 aaKnown RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 H3BRJ5 948 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 KIF2AO00139 706 aaPredicted RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 EEF2KO00418 725 aaKnown RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 TSPAN3O60637 253 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 SRGAP2O75044 1071 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 ZRANB2O95218 330 aaKnown RBP eCLIP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 CXCR5P32302 372 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 CDKN2BP42772 138 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 TPI1P60174 286 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 RPS24P62847 133 aaKnown RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 DPYSQ14117 519 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 LLGL1Q15334 1064 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 EML3Q32P44 896 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 C5orf22Q49AR2 442 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 ACBD5Q5T8D3 534 aaPredicted RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 TRIM68Q6AZZ1 485 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 RFX8Q6ZV50 586 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 CIR1Q86X95 450 aaPredicted RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 CCDC50Q8IVM0 306 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 ZDHHC14Q8IZN3 488 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 OSCP1Q8WVF1 389 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 TBC1D31Q96DN5 1066 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 OSBPL9Q96SU4 736 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 DDX50Q9BQ39 737 aaKnown RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 CARD9Q9H257 536 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 DUS2Q9NX74 493 aaKnown RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 RCOR3Q9P2K3 495 aaPredicted RBP17.12■□□□□ 0.33
VPS4A-202ENST00000562754 FAM50BQ9Y247 325 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 COL4A2P08572 1712 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 C5orf42Q9H799 3197 aa17.12■□□□□ 0.33
VPS4A-202ENST00000562754 hCG_1818297A0A087WSY0 165 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 DRGXA6NNA5 263 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF487B1APH4 448 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 SLC9A3R1O14745 358 aaPredicted RBP17.11■□□□□ 0.33
VPS4A-202ENST00000562754 CNTN5O94779 1100 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ARSAP15289 507 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PSMC3P17980 439 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PTPN7P35236 360 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ARL4AP40617 200 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 IFNAR2P48551 515 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 HCAR3P49019 387 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF135P52742 658 aaPredicted RBP17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PPP2R5EQ16537 467 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ALFQ53S48 1182 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 VSIG1Q86XK7 387 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 MAP7D3Q8IWC1 876 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 CFAP52Q8N1V2 620 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PQLC3Q8N755 202 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PCDH19Q8TAB3 1148 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 COG1Q8WTW3 980 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 DEPDC1BQ8WUY9 529 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms