RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 MFN1Q8IWA4 741 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 AHI1Q8N157 1196 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 CARNMT1Q8N4J0 409 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 WDTC1Q8N5D0 677 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 MINDY1Q8N5J2 469 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.61□□□□□ -0.71
LDLR-214ENST00000560628 FIBINQ8TAL6 211 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 STK32AQ8WU08 396 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 AZIN2Q96A70 460 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 SLC39A13Q96H72 371 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 LMLNQ96KR4 655 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 PRICKLE1Q96MT3 831 aaPredicted RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 SERPINB11Q96P15 392 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 DDX50Q9BQ39 737 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 PRSS16Q9NQE7 514 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 CHMP5Q9NZZ3 219 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 TLR6Q9Y2C9 796 aa10.61□□□□□ -0.71
LDLR-214ENST00000560628 ASCC3Q8N3C0 2202 aaKnown RBP10.61□□□□□ -0.71
LDLR-214ENST00000560628 SYNJ2BP-COX16A0A087WUM0 186 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 METTL12A8MUP2 240 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 SYPP08247 313 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 CSKP41240 450 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 NUMBP49757 651 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 RPS14P62263 151 aaKnown RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 YWHAZP63104 245 aaKnown RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 SHC2P98077 582 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 SEMA3BQ13214 749 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 ST3GAL2Q16842 350 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 HSP90AA4PQ58FG1 418 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 DCAF6Q58WW2 860 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 FSCBQ5H9T9 825 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 MS4A13Q5J8X5 152 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 RAP1GAP2Q684P5 730 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 PIP4P1Q86T03 277 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 LGI2Q8N0V4 545 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 ZCCHC9Q8N567 271 aaKnown RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 MLKLQ8NB16 471 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 HJURPQ8NCD3 748 aaPredicted RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 CADM4Q8NFZ8 388 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 DNASE2BQ8WZ79 361 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 CAMK1GQ96NX5 476 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 LHX5Q9H2C1 402 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 SLC32A1Q9H598 525 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 THAP9Q9H5L6 903 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 POPDC2Q9HBU9 364 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 COX16Q9P0S2 106 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 APEX2Q9UBZ4 518 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 SUN2Q9UH99 717 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 EIF2B4Q9UI10 523 aaKnown RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 DNAJC12Q9UKB3 198 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 AJAP1Q9UKB5 411 aaPredicted RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 INTS6Q9UL03 887 aaKnown RBP10.6□□□□□ -0.71
LDLR-214ENST00000560628 CEP192Q8TEP8 1941 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 PLXND1Q9Y4D7 1925 aa10.6□□□□□ -0.71
LDLR-214ENST00000560628 TNRC6BQ9UPQ9 1833 aaKnown RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 ADAMTS9Q9P2N4 1935 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 A0A1B0GTW7 788 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 FAM170AA1A519 330 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 TYW5A2RUC4 315 aaKnown RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 H0Y626 953 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 FOXN3O00409 490 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 GRAP2O75791 330 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 TRUB2O95900 331 aaKnown RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 IGLV3-19P01714 112 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 APOEP02649 317 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 PNMA6AP0CW24 399 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 CD59P13987 128 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 ACSL1P33121 698 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 CTSOP43234 321 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 FAM193AP78312 1265 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 SIM1P81133 766 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 PTK2Q05397 1052 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 PDCLQ13371 301 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 CDH18Q13634 790 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 BEND5Q7L4P6 421 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 CHSY1Q86X52 802 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 CCDC117Q8IWD4 279 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 DEFB106AQ8N104 65 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 SHC3Q92529 594 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 SNX19Q92543 992 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 RNF34Q969K3 372 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 TTC17Q96AE7 1141 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 PPP1R13BQ96KQ4 1090 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 FAM81BQ96LP2 452 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 CPXM1Q96SM3 734 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 TRIM62Q9BVG3 475 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 IRX2Q9BZI1 471 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 CLSTN2Q9H4D0 955 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 C6orf106Q9H6K1 298 aaPredicted RBP10.59□□□□□ -0.71
LDLR-214ENST00000560628 SIX2Q9NPC8 291 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 SUSD2Q9UGT4 822 aa10.59□□□□□ -0.71
LDLR-214ENST00000560628 LAMA1P25391 3075 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 ACACBO00763 2458 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 GTPBP10A4D1E9 387 aaKnown RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 BCAT2O15382 392 aaPredicted RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 SH3BP5O60239 455 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 SIN3BO75182 1162 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 LUC7L3O95232 432 aaKnown RBP10.58□□□□□ -0.72
LDLR-214ENST00000560628 IGLV3-25P01717 112 aa10.58□□□□□ -0.72
LDLR-214ENST00000560628 PRKCSHP14314 528 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms