RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 AUHQ13825 339 aaKnown RBP13.03□□□□□ -0.32
SHMT2-229ENST00000557348 TPSAB1Q15661 275 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 QPCTQ16769 361 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 KLHL38Q2WGJ6 581 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 FUT10Q6P4F1 479 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 CNKSR3Q6P9H4 555 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 KCNT2Q6UVM3 1135 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 ARHGEF18Q6ZSZ5 1173 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 ZBED8Q8IZ13 594 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 NUP93Q8N1F7 819 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 CRIPAKQ8N1N5 446 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 DQX1Q8TE96 717 aaKnown RBP13.03□□□□□ -0.32
SHMT2-229ENST00000557348 NSMCE1Q8WV22 266 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 HTR3CQ8WXA8 447 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 NDRG1Q92597 394 aaKnown RBP13.03□□□□□ -0.32
SHMT2-229ENST00000557348 SERPINB11Q96P15 392 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 HAPLN3Q96S86 360 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 XAB2Q9HCS7 855 aaKnown RBP13.03□□□□□ -0.32
SHMT2-229ENST00000557348 RAB6BQ9NRW1 208 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 ABI2Q9NYB9 513 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-229ENST00000557348 FNIP2Q9P278 1114 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 DNAJB4Q9UDY4 337 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 BAIAP2L1Q9UHR4 511 aa13.03□□□□□ -0.32
SHMT2-229ENST00000557348 SYNJ2BP-COX16A0A087WUM0 186 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 A0A0A0MRY4 1105 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 EXOC1LA0A1B0GW35 172 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 FGF10O15520 208 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 IRAK2O43187 625 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 CREB3O43889 395 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 B4GALT3O60512 393 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 ANP32DO95626 131 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 FESP07332 822 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 NQO1P15559 274 aaKnown RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 AMPD1P23109 780 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 RPL10AP62906 217 aaKnown RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 COG7P83436 770 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 GBE1Q04446 702 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 BLMHQ13867 455 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 IKBKEQ14164 716 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 PPP2R5DQ14738 602 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 GPNMBQ14956 572 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 GALNTL6Q49A17 601 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 FAM171A1Q5VUB5 890 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 AP1ARQ63HQ0 302 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 CAPRIN2Q6IMN6 1127 aaKnown RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 MSANTD2Q6P1R3 559 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 PRUNE1Q86TP1 453 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 LZTR1Q8N653 840 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 RNF34Q969K3 372 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 SPATA17Q96L03 361 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 SPATA13Q96N96 652 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 TMEM209Q96SK2 561 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 CDK5RAP1Q96SZ6 601 aaKnown RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 VAT1Q99536 393 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 VPS37BQ9H9H4 285 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 EIF2B3Q9NR50 452 aaKnown RBP13.02□□□□□ -0.32
SHMT2-229ENST00000557348 ETNK2Q9NVF9 386 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 ARHGEF38Q9NXL2 777 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 COX16Q9P0S2 106 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 TANC1Q9C0D5 1861 aa13.02□□□□□ -0.32
SHMT2-229ENST00000557348 DCLK1O15075 740 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 PITX1P78337 314 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 NRG1Q02297 640 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 GPR17Q13304 367 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 SEMA5AQ13591 1074 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 PRKD1Q15139 912 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 MTFR1Q15390 333 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 TAC4Q86UU9 113 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 EGFL6Q8IUX8 553 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 SCN4BQ8IWT1 228 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 EPS8L3Q8TE67 593 aaKnown RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 ZNF483Q8TF39 744 aaPredicted RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 C9orf72Q96LT7 481 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 TTPALQ9BTX7 342 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 RHOBTB2Q9BYZ6 727 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 TKTL2Q9H0I9 626 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 INTS9Q9NV88 658 aaKnown RBP13.02□□□□□ -0.33
SHMT2-229ENST00000557348 CLIC5Q9NZA1 410 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 IL37Q9NZH6 218 aa13.02□□□□□ -0.33
SHMT2-229ENST00000557348 PATJQ8NI35 1801 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 FAM92AA1XBS5 289 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 TBKBP1A7MCY6 615 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 SMNDC1O75940 238 aaKnown RBP eCLIP13.01□□□□□ -0.336e-6■□□□□ 8.8
SHMT2-229ENST00000557348 MLNP12872 115 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 CPB1P15086 417 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 GCKP35557 465 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 SLC11A1P49279 550 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 ALDH7A1P49419 539 aaKnown RBP13.01□□□□□ -0.33
SHMT2-229ENST00000557348 EIF4EBP2Q13542 120 aaPredicted RBP13.01□□□□□ -0.33
SHMT2-229ENST00000557348 LONRF1Q17RB8 773 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 PARP6Q2NL67 630 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 LRRC49Q8IUZ0 686 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 PALM2Q8IXS6 379 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 PYROXD2Q8N2H3 581 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 EDEM1Q92611 657 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 PPP1R2P1Q96PQ5 205 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 CATSPERBQ9H7T0 1116 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 LRRC4CQ9HCJ2 640 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 ARHGEF3Q9NR81 526 aa13.01□□□□□ -0.33
SHMT2-229ENST00000557348 DNAJC17Q9NVM6 304 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms