RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZNF143P52747 638 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 RPS24P62847 133 aaKnown RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 ANGPT1Q15389 498 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 RABGAP1LQ5R372 815 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 RNF43Q68DV7 783 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 ANKS1BQ7Z6G8 1248 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 FAM131BQ86XD5 332 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 CCDC117Q8IWD4 279 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 SFTPA1Q8IWL2 248 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 ZNF557Q8N988 423 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 PRSS33Q8NF86 280 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 RPLP0P6Q8NHW5 317 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 USP33Q8TEY7 942 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 FAM172AQ8WUF8 416 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 CENPIQ92674 756 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 ACDQ96AP0 544 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 SIK2Q9H0K1 926 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 MRPL47Q9HD33 250 aaKnown RBP14.06□□□□□ -0.16
SHMT2-228ENST00000557302 STIM2Q9P246 746 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 MYO1AQ9UBC5 1043 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 CLEC4EQ9ULY5 219 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 HS3ST4Q9Y661 456 aa14.06□□□□□ -0.16
SHMT2-228ENST00000557302 CHURC1-FNTBB4DL54 471 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 CCP110O43303 1012 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 CXCL12P48061 93 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 PTPN5P54829 565 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 MRPS21P82921 87 aaKnown RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 GFPT1Q06210 699 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 AUHQ13825 339 aaKnown RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 SLC18A3Q16572 532 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 ARL13BQ3SXY8 428 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 C2orf27AQ580R0 203 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 ACBD5Q5T8D3 534 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 SH3PXD2AQ5TCZ1 1133 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 TTC39BQ5VTQ0 682 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 FBXL22Q6P050 247 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 PKN3Q6P5Z2 889 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 MFN1Q8IWA4 741 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 CFAP52Q8N1V2 620 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 TC2NQ8N9U0 490 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 MYEOVQ96EZ4 313 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 CCDC42Q96M95 316 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 RPRD1AQ96P16 312 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 CNPY3Q9BT09 278 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 ANLNQ9NQW6 1124 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 PRMT8Q9NR22 394 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-228ENST00000557302 FBXO4Q9UKT5 387 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 VANGL2Q9ULK5 521 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 USP34Q70CQ2 3546 aa14.05□□□□□ -0.16
SHMT2-228ENST00000557302 TMEM191CA6NGB0 347 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 PRRT4C9JH25 899 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 I6L893 689 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 LUC7L3O95232 432 aaKnown RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 PSMA2P25787 234 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 TIE1P35590 1138 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 GGCXP38435 758 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 KIR2DL1P43626 348 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 HDAC4P56524 1084 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 SATB1Q01826 763 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 TCF15Q12870 199 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 CDH18Q13634 790 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 ASTE1Q2TB18 679 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 HSF5Q4G112 596 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 RAB6CQ53S08 254 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 EMC10Q5UCC4 262 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 LRRC31Q6UY01 552 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 CARNMT1Q8N4J0 409 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 KCNV2Q8TDN2 545 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 C1orf74Q96LT6 269 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 HAPLN3Q96S86 360 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 CHP1Q99653 195 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 RAB6CQ9H0N0 254 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 THAP2Q9H0W7 228 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 IRF2BPLQ9H1B7 796 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 NHEJ1Q9H9Q4 299 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-228ENST00000557302 TMPRSS4Q9NRS4 437 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 ABCB8Q9NUT2 735 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 NENFQ9UMX5 172 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 STARD13Q9Y3M8 1113 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 CACNA1IQ9P0X4 2223 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 KIAA1549LQ6ZVL6 1849 aa14.04□□□□□ -0.16
SHMT2-228ENST00000557302 ANTXRLA6NF34 631 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 H0Y858 1186 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 PAPSS2O95340 614 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 KLF8O95600 359 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 HLA-FP30511 346 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 ADRA1BP35368 520 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 GALCP54803 685 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 OGDHQ02218 1023 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 CSTF1Q05048 431 aaKnown RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 EIF4HQ15056 248 aaKnown RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 GEN1Q17RS7 908 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 TRMT11Q7Z4G4 463 aaKnown RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 C14orf80Q86SX3 495 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 MAML2Q8IZL2 1156 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 AHI1Q8N157 1196 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 CCAR2Q8N163 923 aaKnown RBP14.03□□□□□ -0.16
SHMT2-228ENST00000557302 CCDC33Q8N5R6 958 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 ALLCQ8N6M5 410 aa14.03□□□□□ -0.16
SHMT2-228ENST00000557302 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms