RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LRRC38Q5VT99 294 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 FAM72DQ6L9T8 149 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 FBXL22Q6P050 247 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 POLNQ7Z5Q5 900 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 FAM72BQ86X60 149 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 RHOT1Q8IXI2 618 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 ZNF683Q8IZ20 524 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 PYROXD2Q8N2H3 581 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 TTC8Q8TAM2 541 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 DDI1Q8WTU0 396 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 HSPH1Q92598 858 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 BHMTQ93088 406 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 IGSF8Q969P0 613 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 TRIM44Q96DX7 344 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 TMA16Q96EY4 203 aaKnown RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 MYEOVQ96EZ4 313 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 P2RY11Q96G91 374 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 UHRF1Q96T88 793 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 IRX2Q9BZI1 471 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 DHX35Q9H5Z1 703 aaKnown RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 MARK1Q9P0L2 795 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 MUTYHQ9UIF7 546 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 GOLGA6L9A6NEM1 432 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 E9PAM4 449 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 HOXC11O43248 304 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 SRGAP2O75044 1071 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 LRIG2O94898 1065 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 PENKP01210 267 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 ADH5P11766 374 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 TNNT1P13805 278 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 RPS24P62847 133 aaKnown RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 GAD2Q05329 585 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 NR1H3Q13133 447 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 SEMA3BQ13214 749 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 DPYSL2Q16555 572 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 C5orf22Q49AR2 442 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 ATP13A4Q4VNC1 1196 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 RABGAP1LQ5R372 815 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 ARTNQ5T4W7 220 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 MANEALQ5VSG8 457 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 TTC39BQ5VTQ0 682 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 FYB2Q5VWT5 728 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 LRRC31Q6UY01 552 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 UBALD2Q8IYN6 164 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 CFAP52Q8N1V2 620 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 HJURPQ8NCD3 748 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 CD101Q93033 1021 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 RPRD1AQ96P16 312 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 ALS2CR12Q96Q35 445 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 KCTD15Q96SI1 283 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-209ENST00000553949 EPAS1Q99814 870 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 BBS2Q9BXC9 721 aa12.64□□□□□ -0.39
SHMT2-209ENST00000553949 IGLV3-10A0A075B6K4 115 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 TYW5A2RUC4 315 aaKnown RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 DRGXA6NNA5 263 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 NEDD8-MDP1E9PL57 170 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 PSTPIP1O43586 416 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 CREB3O43889 395 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 TBL1XO60907 577 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 FTCDO95954 541 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 TYRP14679 529 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 HOXD9P28356 352 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 GJA4P35212 333 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 IRAK1P51617 712 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 ARSEP51690 589 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 KRT81Q14533 505 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 GAB4Q2WGN9 574 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 PPP6R3Q5H9R7 873 aaPredicted RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 MPP7Q5T2T1 576 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 ZFYVE27Q5T4F4 411 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 RWDD4Q6NW29 188 aaKnown RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 PEX26Q7Z412 305 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 NT5DC3Q86UY8 548 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 TRIM58Q8NG06 486 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 KCND1Q9NSA2 647 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 KLHL11Q9NVR0 708 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 PLK2Q9NYY3 685 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 STIM2Q9P246 746 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 PPARGC1AQ9UBK2 798 aaKnown RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 AMFRQ9UKV5 643 aa12.63□□□□□ -0.39
SHMT2-209ENST00000553949 TCF20Q9UGU0 1960 aaKnown RBP12.63□□□□□ -0.39
SHMT2-209ENST00000553949 KIF26AQ9ULI4 1882 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-209ENST00000553949 EEF2KO00418 725 aaKnown RBP12.62□□□□□ -0.39
SHMT2-209ENST00000553949 CTNNA2P26232 953 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 HTR7P34969 479 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 CTNNA1P35221 906 aaKnown RBP12.62□□□□□ -0.39
SHMT2-209ENST00000553949 SOX9P48436 509 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 MARCKSL1P49006 195 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 ZNF135P52742 658 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-209ENST00000553949 CDH6P55285 790 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 TPI1P60174 286 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 AMPD2Q01433 879 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 SLC44A4Q53GD3 710 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 IER5LQ5T953 404 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 RNF43Q68DV7 783 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 CHST9Q7L1S5 443 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 CIR1Q86X95 450 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-209ENST00000553949 ETFBKMTQ8IXQ9 262 aa12.62□□□□□ -0.39
SHMT2-209ENST00000553949 C17orf53Q8N3J3 647 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms