RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CHST9Q7L1S5 443 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 C11orf74Q86VG3 221 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 ERICH1Q86X53 443 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 ZNF677Q86XU0 584 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 XYLT1Q86Y38 959 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 HJURPQ8NCD3 748 aaPredicted RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 FIBINQ8TAL6 211 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 WFIKKN2Q8TEU8 576 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 UCMAQ8WVF2 138 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 CPA5Q8WXQ8 436 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NT5C3BQ969T7 300 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 C18orf8Q96DM3 657 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 ERLEC1Q96DZ1 483 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 BTN2A3PQ96KV6 586 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NPY6RQ99463 290 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 DDX50Q9BQ39 737 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 CIPCQ9C0C6 399 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 NAT10Q9H0A0 1025 aaKnown RBP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 PDCL3Q9H2J4 239 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 SYNCQ9H7C4 482 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 FAM204AQ9H8W3 233 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 ABCB8Q9NUT2 735 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 DDIT4Q9NX09 232 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 STIM2Q9P246 746 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 BCCIPQ9P287 314 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 GGA2Q9UJY4 613 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 USP18Q9UMW8 372 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 PCDHGA5Q9Y5G8 931 aa10.65□□□□□ -0.7
CCDC88C-206ENST00000553437 KIAA1549LQ6ZVL6 1849 aa10.65□□□□□ -0.71
CCDC88C-206ENST00000553437 ATRXP46100 2492 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ATG2BQ96BY7 2078 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 FAM170AA1A519 330 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TEX33O43247 280 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 APOEP02649 317 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF806P0C7X5 589 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC2A3P11169 496 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TFE3P19532 575 aaPredicted RBP10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TACR2P21452 398 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 PRKCHP24723 683 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 CCR1P32246 355 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 GBP1P32455 592 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 STAT1P42224 750 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 MATKP42679 507 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF165P49910 485 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 LMNB2Q03252 620 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 LMAN2Q12907 356 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ELF2Q15723 593 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 CCDC6Q16204 474 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 PTPRNQ16849 979 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 FUT11Q495W5 492 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 FSCBQ5H9T9 825 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 NAA35Q5VZE5 725 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TRNP1Q6NT89 227 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 PRR23CQ6ZRP0 262 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 LGI2Q8N0V4 545 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 AHI1Q8N157 1196 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 CFAP52Q8N1V2 620 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ATP6V0D2Q8N8Y2 350 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 NEK11Q8NG66 645 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 CYB5D2Q8WUJ1 264 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TTC17Q96AE7 1141 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 MRGPRX1Q96LB2 322 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 SPAG5Q96R06 1193 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 PCDHB18PQ96TA0 734 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC6A17Q9H1V8 727 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TMEM245Q9H330 911 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 RTN4Q9NQC3 1192 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 ANLNQ9NQW6 1124 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 DLL3Q9NYJ7 618 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 TMEM59LQ9UK28 342 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 INTS6Q9UL03 887 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 LAMA1P25391 3075 aa10.64□□□□□ -0.71
CCDC88C-206ENST00000553437 SYNJ2BP-COX16A0A087WUM0 186 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 BCLAF3A2AJT9 711 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 SMTNL1A8MU46 457 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PRR5-ARHGAP8B1AHC4 643 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 I6L893 689 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 M0QYT0 321 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 LUC7L3O95232 432 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 UNGP13051 313 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MMP8P22894 467 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 FLT3P36888 993 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MPLP40238 635 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 ID4P47928 161 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 CXCR3P49682 368 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 RNASE9P60153 205 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 ARHGAP8P85298 464 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PTP4A2Q12974 167 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 NME3Q13232 169 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 BYSLQ13895 437 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 E2F5Q15329 346 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 RSPO4Q2I0M5 234 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 FAM102AQ5T9C2 384 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MBLAC2Q68D91 279 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 FBXL22Q6P050 247 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MMS22LQ6ZRQ5 1243 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 BNIPLQ7Z465 357 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 METTL3Q86U44 580 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms