RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NUDT10Q8NFP7 164 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 KCNG4Q8TDN1 519 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 AFG1LQ8WV93 481 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 SLC7A6OSQ96CW6 309 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 NUDT11Q96G61 164 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 CFAP53Q96M91 514 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 TIGD1Q96MW7 591 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 GNRHR2Q96P88 292 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 PPP1R9BQ96SB3 815 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 DMRTA2Q96SC8 542 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 MS4A7Q9GZW8 240 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 HIPK3Q9H422 1215 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 RIC8AQ9NPQ8 531 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 NECTIN3Q9NQS3 549 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ASH1LQ9NR48 2969 aaKnown RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 ING3Q9NXR8 418 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 TMOD4Q9NZQ9 345 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 PLEKHM1Q9Y4G2 1056 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 SMG1Q96Q15 3661 aaKnown RBP4.2□□□□□ -1.74
LIMA1-208ENST00000551691 FAM208BQ5VWN6 2430 aa4.2□□□□□ -1.74
LIMA1-208ENST00000551691 C9orf118A6NHY6 69 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 NT5C1B-RDH14C9J2C7 533 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 AREL1O15033 823 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ASNA1O43681 348 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 BAIAP3O94812 1187 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TOX4O94842 621 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 HAUS5O94927 633 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TNFRSF6BO95407 300 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MATN4O95460 622 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 JUNP05412 331 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 POLBP06746 335 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PGK2P07205 417 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ASGR1P07306 291 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 XRCC6P12956 609 aaKnown RBP eCLIP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TPH1P17752 444 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PPP2R1AP30153 589 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 GUCY1A2P33402 732 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ACVRL1P37023 503 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ETV4P43268 484 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 COPAP53621 1224 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 CLNS1AP54105 237 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ALDH18A1P54886 795 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 NPEPPSP55786 919 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 BPIFB4P59827 614 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PPP2CBP62714 309 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PPP2CAP67775 309 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 BEX3Q00994 111 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 APBA1Q02410 837 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PTK2BQ14289 1009 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 EIF4HQ15056 248 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TCEAL5Q5H9L2 206 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 CRB2Q5IJ48 1285 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 FBXO47Q5MNV8 452 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 DCAF12L1Q5VU92 463 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MZT2BQ6NZ67 158 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 ZNF529Q6P280 563 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 USP17L6PQ6QN14 398 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 G2E3Q7L622 706 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TTC30AQ86WT1 665 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 FTSJ3Q8IY81 847 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 FAM9BQ8IZU0 186 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TMEM105Q8N8V8 129 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 CYP2W1Q8TAV3 490 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TBC1D22AQ8WUA7 517 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 STYXQ8WUJ0 223 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 NUP133Q8WUM0 1156 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 UCMAQ8WVF2 138 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MOGAT1Q96PD6 335 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 KATNAL1Q9BW62 490 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 PLA2G12BQ9BX93 195 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MOV10L1Q9BXT6 1211 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MTIF3Q9H2K0 278 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 UBN1Q9NPG3 1134 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 WASH6PQ9NQA3 447 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 RLIMQ9NVW2 624 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 DLL3Q9NYJ7 618 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 HERC5Q9UII4 1024 aaKnown RBP4.19□□□□□ -1.74
LIMA1-208ENST00000551691 MID2Q9UJV3 735 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 HDAC5Q9UQL6 1122 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 TMEM98Q9Y2Y6 226 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 WDFY3Q8IZQ1 3526 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 GRIN2DO15399 1336 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 SYNRGQ9UMZ2 1314 aa4.19□□□□□ -1.74
LIMA1-208ENST00000551691 CCDC196A0A1B0GTZ2 297 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 LOC102723971A0A1B0GUV8 181 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 TCRBV7S2A1N4TA0A589 114 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 A6NLC8 198 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 IPO5O00410 1097 aaKnown RBP4.18□□□□□ -1.74
LIMA1-208ENST00000551691 LINC01565O15544 149 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 MTSS1O43312 755 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 MBTPS2O43462 519 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 COQ9O75208 318 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 ENTPD3O75355 529 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 USP1O94782 785 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 TXNP10599 105 aaKnown RBP4.18□□□□□ -1.74
LIMA1-208ENST00000551691 CYP2C9P11712 490 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 ACVR2AP27037 513 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 CASRP41180 1078 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 SLC11A2P49281 568 aa4.18□□□□□ -1.74
LIMA1-208ENST00000551691 AARSP49588 968 aaKnown RBP eCLIP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms