RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SNX16P57768 344 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 MRPS35P82673 323 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 MUM1Q2TAK8 710 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 GPATCH2LQ9NWQ4 482 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 TTLL3Q9Y4R7 772 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 IQANK1A0A1B0GTG1 560 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 ENO4A6NNW6 628 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CXorf49A8MYA2 514 aaPredicted RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 FCHO1O14526 889 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 RPL9P32969 192 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 VEGFBP49765 207 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 RABGGTBP53611 331 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 ATXN1P54253 815 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CDH6P55285 790 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 IRX1P78414 480 aaPredicted RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 PAN2Q504Q3 1202 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 SCYL2Q6P3W7 929 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CD300LGQ6UXG3 332 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CLEC20AQ6ZU45 233 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CAPN14A8MX76 684 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 CAPN9O14815 690 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 PSMG1O95456 288 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 NPR3P17342 541 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 MRPS5P82675 430 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 TSNAXIP1Q2TAA8 658 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 ZNF598Q86UK7 904 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 RTN4RL1Q86UN2 441 aaPredicted RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 ZC3H18Q86VM9 953 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 TREML1Q86YW5 311 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 SRPK1Q96SB4 655 aaKnown RBP17.69■□□□□ 0.42
SPIDR-227ENST00000541342 INPP5FQ9Y2H2 1132 aa17.69■□□□□ 0.42
SPIDR-227ENST00000541342 ACADSBP45954 432 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 OCRLQ01968 901 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 ADIGQ0VDE8 80 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 CA9Q16790 459 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 FAM91A1Q658Y4 838 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 LMNTD2Q8IXW0 634 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 CFAP61Q8NHU2 1237 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 SCG3Q8WXD2 468 aaKnown RBP17.68■□□□□ 0.42
SPIDR-227ENST00000541342 DNAI2Q9GZS0 605 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 ZNF395Q9H8N7 513 aaPredicted RBP17.68■□□□□ 0.42
SPIDR-227ENST00000541342 MYBPHLA2RUH7 354 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 KLF11O14901 512 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 MCF2LO15068 1137 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 IL4RP24394 825 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 KLC1Q07866 573 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 KBTBD2Q8IY47 623 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 TMEM86AQ8N2M4 240 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 SLC43A3Q8NBI5 491 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 DTX3LQ8TDB6 740 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 CENPIQ92674 756 aaPredicted RBP17.68■□□□□ 0.42
SPIDR-227ENST00000541342 TMEM30AQ9NV96 361 aa17.68■□□□□ 0.42
SPIDR-227ENST00000541342 SMAPO00193 183 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 INHBAP08476 426 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 AMPD1P23109 780 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SCNN1AP37088 669 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 PTPN9P43378 593 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 LHX1P48742 406 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 NDUFV1P49821 464 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 YWHAGP61981 247 aaKnown RBP eCLIP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 HTRA3P83110 453 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 ZBTB16Q05516 673 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 ARCQ7LC44 396 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 PHC3Q8NDX5 983 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 RTP3Q9BQQ7 232 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 TSEN34Q9BSV6 310 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 TUBB6Q9BUF5 446 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 MMADHCQ9H3L0 296 aaPredicted RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SQORQ9Y6N5 450 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 WASF2Q9Y6W5 498 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 CPA2P48052 419 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 CACNA2D1P54289 1103 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 YWHAZP63104 245 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 LBRQ14739 615 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 NOMO1Q15155 1222 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 TMEM154Q6P9G4 183 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 LRRC74BQ6ZQY2 392 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 HASPINQ8TF76 798 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 ZNF296Q8WUU4 475 aaPredicted RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 PCED1BQ96HM7 432 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SNRNP25Q9BV90 132 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 USP29Q9HBJ7 922 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 HMX1Q9NP08 348 aaPredicted RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SMYD2Q9NRG4 433 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 KRT82Q9NSB4 513 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 F8W810 466 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 GNRH1P01148 92 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 BRCC3P46736 316 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 MAP3K7CLP57077 242 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 SLC34A1Q06495 639 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 LINC01599Q8WXQ3 324 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 MED10Q9BTT4 135 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 MAGEB5Q9BZ81 275 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 STX18Q9P2W9 335 aaKnown RBP17.67■□□□□ 0.42
SPIDR-227ENST00000541342 ASB3Q9Y575 518 aa17.67■□□□□ 0.42
SPIDR-227ENST00000541342 TRIM49D1C9J1S8 452 aa17.66■□□□□ 0.42
SPIDR-227ENST00000541342 UGT1A9O60656 530 aa17.66■□□□□ 0.42
SPIDR-227ENST00000541342 B3GAT3O94766 335 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms