RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SCOCQ9UIL1 159 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 MFHAS1Q9Y4C4 1052 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ZSWIM8A7E2V4 1837 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 SPECC1L-ADORA2AF8WAN1 911 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 METTL18O95568 372 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 SCN4AP35499 1836 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 TAF6P49848 677 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 ADAM17P78536 824 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 GBE1Q04446 702 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 BST2Q10589 180 aaKnown RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 TRIP12Q14669 1992 aaPredicted RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 BOLA3Q53S33 107 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 CXCL17Q6UXB2 119 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 FAM131BQ86XD5 332 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 SLC25A41Q8N5S1 370 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 LPPQ93052 612 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 CCDC106Q9BWC9 280 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 NMRK2Q9NPI5 230 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 HBS1LQ9Y450 684 aaKnown RBP12.89□□□□□ -0.35
RNF4-222ENST00000541204 ASB3Q9Y575 518 aa12.89□□□□□ -0.35
RNF4-222ENST00000541204 TNPO2O14787 897 aaKnown RBP12.88□□□□□ -0.35
RNF4-222ENST00000541204 TM7SF2O76062 418 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 BEST1O76090 585 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 PGK1P00558 417 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 CD4P01730 458 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 FESP07332 822 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 BPGMP07738 259 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 GRIA1P42261 906 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 NDUFV1P49821 464 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 LILRA4P59901 499 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 PITX1P78337 314 aaPredicted RBP12.88□□□□□ -0.35
RNF4-222ENST00000541204 CDC42EP1Q00587 391 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 NBPF20Q3BBV1 942 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 GNASQ5JWF2 1037 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 WSCD1Q658N2 575 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 ZNF534Q76KX8 674 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 NET1Q7Z628 596 aaPredicted RBP12.88□□□□□ -0.35
RNF4-222ENST00000541204 OSTM1Q86WC4 334 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 ANKRD52Q8NB46 1076 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 RNF169Q8NCN4 708 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 FRMD8Q9BZ67 464 aaPredicted RBP12.88□□□□□ -0.35
RNF4-222ENST00000541204 SLC7A8Q9UHI5 535 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 HTTP42858 3142 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 MEI4A8MW99 385 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 SNNO75324 88 aaPredicted RBP12.88□□□□□ -0.35
RNF4-222ENST00000541204 GNAT1P11488 350 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 ANPEPP15144 967 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 TGM2P21980 687 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 CYP2F1P24903 491 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 BCAT1P54687 386 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 SATB1Q01826 763 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 ADIGQ0VDE8 80 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 UNC93AQ86WB7 457 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 UNC5BQ8IZJ1 945 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 STKLD1Q8NE28 680 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 SHKBP1Q8TBC3 707 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 SIGLEC10Q96LC7 697 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 TBCBQ99426 244 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 TTC1Q99614 292 aa12.88□□□□□ -0.35
RNF4-222ENST00000541204 BCLAF3A2AJT9 711 aaKnown RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 F8W8V4 182 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 CIB2O75838 187 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 CRHR1P34998 444 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 MLH1P40692 756 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 CACNA2D1P54289 1103 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 STX3Q13277 289 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 PDK2Q15119 407 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 DCAF6Q58WW2 860 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 C1orf146Q5VVC0 180 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 CTU1Q7Z7A3 348 aaKnown RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 PIGZQ86VD9 579 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 GSDMBQ8TAX9 411 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 DEPDC1BQ8WUY9 529 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 GATA6Q92908 595 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 MTBPQ96DY7 904 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 ZNF560Q96MR9 790 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 MED10Q9BTT4 135 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 MKS1Q9NXB0 559 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 SLC17A6Q9P2U8 582 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 ANGPTL2Q9UKU9 493 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 FAM159BA6NKW6 160 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 HAS3O00219 553 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 PTGESO14684 152 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 AHCYL1O43865 530 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 LYPLA1O75608 230 aaPredicted RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 BAG2O95816 211 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 UBTFL6P0CB48 400 aaPredicted RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 DESP17661 470 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 CRYBB1P53674 252 aaPredicted RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 ACTR3P61158 418 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 PURAQ00577 322 aaKnown RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 CBLBQ13191 982 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 SLC9A4Q6AI14 798 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 C16orf46Q6P387 395 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 B3GALNT2Q8NCR0 500 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 EBNA1BP2Q99848 306 aaKnown RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 PAPOLBQ9NRJ5 636 aaKnown RBP12.87□□□□□ -0.35
RNF4-222ENST00000541204 AP4E1Q9UPM8 1137 aa12.87□□□□□ -0.35
RNF4-222ENST00000541204 ITM2AO43736 263 aa12.86□□□□□ -0.35
RNF4-222ENST00000541204 USP1O94782 785 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms