RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MDM1Q8TC05 714 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 JADE3Q92613 823 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 DNALI1O14645 258 aaPredicted RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 PARNO95453 639 aaKnown RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 MAPK1P28482 360 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ELK3P41970 407 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 GALNTL6Q49A17 601 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 KATNAL2Q8IYT4 538 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 LENG1Q96BZ8 264 aaPredicted RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 CCDC3Q9BQI4 270 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PCDHA2Q9Y5H9 948 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PARP4Q9UKK3 1724 aaKnown RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 KNDC1Q76NI1 1749 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 LRRC10BA6NIK2 292 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 A8MX80 341 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 IGF2BP3O00425 579 aaKnown RBP eCLIP14.44□□□□□ -0.1
USP3-204ENST00000540797 CLDN5O00501 218 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PCNAP12004 261 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PGAM1P18669 254 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 PRKCIP41743 596 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 ITGA9Q13797 1035 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 KCNMB4Q86W47 210 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 C6orf203Q9P0P8 240 aaPredicted RBP14.44□□□□□ -0.1
USP3-204ENST00000540797 DNPEPQ9ULA0 475 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 DTNAQ9Y4J8 743 aa14.44□□□□□ -0.1
USP3-204ENST00000540797 AP5Z1O43299 807 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 GLUD2P49448 558 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 BMPR2Q13873 1038 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 BOP1Q14137 746 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 ARSHQ5FYA8 562 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 USP45Q70EL2 814 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 ZSWIM2Q8NEG5 633 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 OMDQ99983 421 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TAS2R14Q9NYV8 317 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 SLC24A2Q9UI40 661 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 ERI2A8K979 691 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 TBL1XO60907 577 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 OR56A5P0C7T3 313 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 RBL1P28749 1068 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 LSP1P33241 339 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 DOK6Q6PKX4 331 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 SPATA20Q8TB22 786 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 CLEC4DQ8WXI8 215 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 MFSD14AQ96MC6 490 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TRIM4Q9C037 500 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 WDR41Q9HAD4 459 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 CNTNAP1P78357 1384 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 AKAP10O43572 662 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 VAPBO95292 243 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 CYP2A7P20853 494 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 MAPK9P45984 424 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 CDC16Q13042 620 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 RRP1BQ14684 758 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 MEA1Q16626 185 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 SETMARQ53H47 684 aaPredicted RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 FAM35AQ86V20 835 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TSEN34Q9BSV6 310 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 NIFKQ9BYG3 293 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 COL20A1Q9P218 1284 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TPBGLP0DKB5 382 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TCN1P20061 433 aaPredicted RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 SP100P23497 879 aaPredicted RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 PTPN3P26045 913 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 GPC1P35052 558 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 NCALDP61601 193 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 TBX2Q13207 712 aaPredicted RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 HNRNPLLQ8WVV9 542 aaKnown RBP14.43□□□□□ -0.1
USP3-204ENST00000540797 TNFRSF25Q93038 417 aa14.43□□□□□ -0.1
USP3-204ENST00000540797 B2RBV5 119 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 TGFB1I1O43294 461 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 PRIM2P49643 509 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SMAD3P84022 425 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 SKOR1P84550 965 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 OVGP1Q12889 678 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 CRHR2Q13324 411 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ZC3H12BQ5HYM0 836 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 OTOP2Q7RTS6 562 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SUGP1Q8IWZ8 645 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 C12orf29Q8N999 325 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 GRIN3AQ8TCU5 1115 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SHC3Q92529 594 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SEC16BQ96JE7 1060 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ACTR8Q9H981 624 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ZNF556Q9HAH1 456 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 RGS18Q9NS28 235 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ANKRD26Q9UPS8 1709 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 A0A0B4J269 797 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SMIM28A0A1B0GU29 152 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 WNT7AO00755 349 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 PJA2O43164 708 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SNRPD1P62314 119 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 CNTN1Q12860 1018 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SPANXN3Q5MJ09 141 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 ZNF470Q6ECI4 717 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 WDR93Q6P2C0 686 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 IFNL1Q8IU54 200 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 SERAC1Q96JX3 654 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 C12orf42Q96LP6 360 aa14.42□□□□□ -0.1
USP3-204ENST00000540797 MRPL45Q9BRJ2 306 aaKnown RBP14.42□□□□□ -0.1
USP3-204ENST00000540797 THTPAQ9BU02 230 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms