RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 VSTM1Q6UX27 236 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 CLEC9AQ6UXN8 241 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 DCDC5Q6ZRR9 648 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 ZDHHC17Q8IUH5 632 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 CCDC28AQ8IWP9 274 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 EXOC8Q8IYI6 725 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 SAMD14Q8IZD0 417 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 FSTL5Q8N475 847 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 C12orf76Q8N812 135 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 MAFAQ8NHW3 353 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 MORC4Q8TE76 937 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 PNISRQ8TF01 805 aaKnown RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 LRRC46Q96FV0 321 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 HIC2Q96JB3 615 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 CCDC17Q96LX7 622 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 NUDT22Q9BRQ3 303 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 CINPQ9BW66 212 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 RNF26Q9BY78 433 aaPredicted RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 TMEM8AQ9HCN3 771 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 SEMA5BQ9P283 1151 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 FZD4Q9ULV1 537 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 CA14Q9ULX7 337 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 PLCH1Q4KWH8 1693 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 PHRF1Q9P1Y6 1649 aaKnown RBP4.05□□□□□ -1.76
USP48-215ENST00000534705 C1orf167Q5SNV9 1468 aa4.05□□□□□ -1.76
USP48-215ENST00000534705 MON2Q7Z3U7 1717 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 LRPPRCP42704 1394 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 ABCC11Q96J66 1382 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 PLEKHH1Q9ULM0 1364 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 LRP6O75581 1613 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 CYP2D7A0A087X1C5 515 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 HMGB1P1B2RPK0 211 aaPredicted RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 HNRNPDLO14979 420 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 COQ9O75208 318 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 RNF8O76064 485 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 ATF7P17544 494 aaPredicted RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 COPB1P53618 953 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 GPC5P78333 572 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 DNASE1L3Q13609 305 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 FHL3Q13643 280 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 KCNJ12Q14500 433 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 KCNB1Q14721 858 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 LONRF1Q17RB8 773 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 ARL13BQ3SXY8 428 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 AASDHQ4L235 1098 aaPredicted RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 DGKKQ5KSL6 1271 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 ARL6IP4Q66PJ3 421 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 HIBCHQ6NVY1 386 aaPredicted RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 TMEM65Q6PI78 240 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 CLASRPQ8N2M8 674 aaKnown RBP4.04□□□□□ -1.76
USP48-215ENST00000534705 C11orf44Q8N8P7 122 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 HMCESQ96FZ2 354 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 RIPOR3Q96MK2 946 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 ZNF700Q9H0M5 742 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 VPS33BQ9H267 617 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 NECTIN3Q9NQS3 549 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 LPAR3Q9UBY5 353 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 PHTF1Q9UMS5 762 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 LRP12Q9Y561 859 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 WNK3Q9BYP7 1800 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 PXDNQ92626 1479 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 NRAPQ86VF7 1730 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 NWD2Q9ULI1 1742 aa4.04□□□□□ -1.76
USP48-215ENST00000534705 USP54Q70EL1 1684 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 NRKQ7Z2Y5 1582 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 BCAR3O75815 825 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 CCKARP32238 428 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 PLCD1P51178 756 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 DEUP1Q05D60 604 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 BTKQ06187 659 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 NSUN2Q08J23 767 aaKnown RBP eCLIP4.03□□□□□ -1.76
USP48-215ENST00000534705 CCDC15Q0P6D6 951 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 MAPKAPK3Q16644 382 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 FAM209BQ5JX69 171 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 MEX3CQ5U5Q3 659 aaKnown RBP4.03□□□□□ -1.76
USP48-215ENST00000534705 FAM90A2PQ658T7 463 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 YTHDF3Q7Z739 585 aaKnown RBP4.03□□□□□ -1.76
USP48-215ENST00000534705 DEPTORQ8TB45 409 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 PIGOQ8TEQ8 1089 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 OVCA2Q8WZ82 227 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 C5orf34Q96MH7 638 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 HS6ST2Q96MM7 605 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 FAM118BQ9BPY3 351 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 PRSS22Q9GZN4 317 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 TM7SF3Q9NS93 570 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 RGL1Q9NZL6 768 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 ASAP1Q9ULH1 1129 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 MYOM1P52179 1685 aa4.03□□□□□ -1.76
USP48-215ENST00000534705 LTN1O94822 1766 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 WDR17Q8IZU2 1322 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 TULP4Q9NRJ4 1543 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 E5RJQ4 531 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 NCK2O43639 380 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 PLIN1O60240 522 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 EIF3JO75822 258 aaKnown RBP4.02□□□□□ -1.77
USP48-215ENST00000534705 VIPP01282 170 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 MYL3P08590 195 aa4.02□□□□□ -1.77
USP48-215ENST00000534705 TMIGD3P0DMS9 266 aaPredicted RBP4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms