RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KIRREL2Q6UWL6 708 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 IZUMO1Q8IYV9 350 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 KIAA0319LQ8IZA0 1049 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 ABRAQ8N0Z2 381 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 GALNT4Q8N4A0 578 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 SLC15A4Q8N697 577 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 TERB1Q8NA31 727 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 C8orf58Q8NAV2 365 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 FAM156AQ8NDB6 213 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 OR6B3Q8NGW1 331 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 C5orf34Q96MH7 638 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 SNX18Q96RF0 628 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 STRBPQ96SI9 672 aaKnown RBP4.57□□□□□ -1.68
CD44-235ENST00000532339 THAP7Q9BT49 309 aaPredicted RBP4.57□□□□□ -1.68
CD44-235ENST00000532339 B3GNT5Q9BYG0 378 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 PRSS22Q9GZN4 317 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 FAM204AQ9H8W3 233 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 ZSCAN32Q9NX65 697 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 NCOR2Q9Y618 2525 aa4.57□□□□□ -1.68
CD44-235ENST00000532339 FAM208BQ5VWN6 2430 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ALPK3Q96L96 1907 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ZNF521Q96K83 1311 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 BTN3A1O00481 513 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 EXOC3O60645 756 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 USP1O94782 785 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 PDE8BO95263 885 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 HSP90AB1P08238 724 aaKnown RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 CHRM5P08912 532 aaPredicted RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 IFIT2P09913 472 aaKnown RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 SLC5A1P13866 664 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ADORA2AP29274 412 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 NF2P35240 595 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 MMP13P45452 471 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 HTR3AP46098 478 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 PRKAG1P54619 331 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ZIK1Q3SY52 487 aaPredicted RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 FCRL6Q6DN72 434 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 SLC2A7Q6PXP3 512 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ARMC9Q7Z3E5 817 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 CAND1Q86VP6 1230 aaKnown RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 C9orf106Q8NAJ2 232 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 RAET1EQ8TD07 263 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 RITA1Q96K30 269 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 LENG8Q96PV6 779 aaPredicted RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 MS4A7Q9GZW8 240 aaPredicted RBP4.56□□□□□ -1.68
CD44-235ENST00000532339 SCN7AQ01118 1682 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 REV3LO60673 3130 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 ZNF292O60281 2723 aa4.56□□□□□ -1.68
CD44-235ENST00000532339 NCAPD2Q15021 1401 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 RIC1Q4ADV7 1423 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 LAMB2P55268 1798 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 ASTN2O75129 1339 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 DNAH14Q0VDD8 3507 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 CYP2D7A0A087X1C5 515 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SMIM35A0A1B0GVV1 85 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 MED19A0JLT2 244 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 KRTAP29-1A8MX34 341 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 KCNU1A8MYU2 1149 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 IGKV2-30P06310 120 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 MYCLP12524 364 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 HOXD10P28358 340 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SERPINB3P29508 390 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 AGFG1P52594 562 aaKnown RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 MAPK7Q13164 816 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 CTBP1Q13363 440 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 OS9Q13438 667 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 RAB32Q13637 225 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SWSAP1Q6NVH7 229 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 MIS18BP1Q6P0N0 1132 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 NPNTQ6UXI9 565 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SERPINA13PQ6UXR4 307 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 CCDC149Q6ZUS6 474 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 NBPF5PQ86XG9 351 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 CNGA4Q8IV77 575 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SPICE1Q8N0Z3 855 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 BPIFB1Q8TDL5 484 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 RSPRY1Q96DX4 576 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 ZNF48Q96MX3 618 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 DEFB118Q96PH6 123 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 LBHD1Q9BQE6 289 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 NAA15Q9BXJ9 866 aaKnown RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 DPH1Q9BZG8 443 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 CIPCQ9C0C6 399 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 ARHGAP39Q9C0H5 1083 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 TMX4Q9H1E5 349 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 TUBA8Q9NY65 449 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.55□□□□□ -1.68
CD44-235ENST00000532339 TAGLN3Q9UI15 199 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 PHTF1Q9UMS5 762 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 L1RE1Q9UN81 338 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 PAXBP1Q9Y5B6 917 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 SNX14Q9Y5W7 946 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 ZNF318Q5VUA4 2279 aa4.55□□□□□ -1.68
CD44-235ENST00000532339 PSMD9O00233 223 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PPEF2O14830 753 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PHGDHO43175 533 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 TBC1D4O60343 1298 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 WDHD1O75717 1129 aaPredicted RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 TOP3BO95985 862 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 KITP10721 976 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms