RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-215	ENST00000525241	MORC2	Q9Y6X9	1032 aa	Predicted RBP	4.92	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3D	A0A087WVF3	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3I	A0A087WXS9	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3E	A0A087X179	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3K	A0A087X1G2	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3B	A6NDS4	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3F	A6NER0	549 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	HMX3	A6NHT5	357 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	MBD3L5	A6NJ08	208 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	C3orf70	A6NLC5	250 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3L	B9A6J9	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241		H0Y3Z8	333 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	INPPL1	O15357	1258 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	FAM155B	O75949	473 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	ALDOA	P04075	364 aa	Known RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3H	P0C7X1	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	KEL	P23276	732 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	SERPINA4	P29622	427 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	RPS6KA2	Q15349	733 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBRG1	Q3YBR2	411 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	GLE1	Q53GS7	698 aa	Known RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3G	Q6DHY5	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3C	Q6IPX1	549 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	ZNF474	Q6S9Z5	364 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	RHPN2	Q8IUC4	686 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	ADGRF3	Q8IZF5	1079 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TBC1D3	Q8IZP1	549 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-215	ENST00000525241	CPT1B	Q92523	772 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	PIGK	Q92643	395 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	C3orf49	Q96BT1	292 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	TRIM2	Q9C040	744 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	PRSS22	Q9GZN4	317 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	PRDM16	Q9HAZ2	1276 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	NDUFAF4	Q9P032	175 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	PCDHA10	Q9Y5I2	948 aa		4.91	□□□□□ -1.62
CD44-215	ENST00000525241	SLC22A23	A1A5C7	686 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	FAM90A20P	A6NIJ5	464 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	AGAP5	A6NIR3	686 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	CNTN5	O94779	1100 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	HEXIM1	O94992	359 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SGPL1	O95470	568 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	ST6GAL1	P15907	406 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	RPS6KB1	P23443	525 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	ABCG1	P45844	678 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	PRKAA2	P54646	552 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SHC2	P98077	582 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	HSF1	Q00613	529 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	GHRHR	Q02643	423 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	RNASEL	Q05823	741 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	MTA1	Q13330	715 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	MTX3	Q5HYI7	312 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	EARS2	Q5JPH6	523 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	ZNF626	Q68DY1	528 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SLC2A7	Q6PXP3	512 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	UBE2Q1	Q7Z7E8	422 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	CNGA4	Q8IV77	575 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SUGP1	Q8IWZ8	645 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	UEVLD	Q8IX04	471 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SPATA5	Q8NB90	893 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	OR6Y1	Q8NGX8	325 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SLC2A12	Q8TD20	617 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	WIPF2	Q8TF74	440 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	TBC1D20	Q96BZ9	403 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	NPAS1	Q99742	590 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SFXN1	Q9H9B4	322 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SEPSECS	Q9HD40	501 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	SAYSD1	Q9NPB0	183 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	KCND3	Q9UK17	655 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	COPG1	Q9Y678	874 aa	Known RBP	4.9	□□□□□ -1.63
CD44-215	ENST00000525241	EMSY	Q7Z589	1322 aa		4.9	□□□□□ -1.63
CD44-215	ENST00000525241	COL3A1	P02461	1466 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	C2CD4B	A6NLJ0	364 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	KCNU1	A8MYU2	1149 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241		E5RJQ4	531 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	DHRS4L1	P0CG22	281 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	AKR1A1	P14550	325 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ADD2	P35612	726 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	CUL4B	Q13620	913 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	DCTN1	Q14203	1278 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	SMAD1	Q15797	465 aa	Known RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	EZH2	Q15910	746 aa	Known RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ANXA2R	Q3ZCQ2	193 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	INO80D	Q53TQ3	878 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	PAPD7	Q5XG87	772 aa	Known RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	DGAT2L7P	Q6IED9	249 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ANO7	Q6IWH7	933 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	TMEM88	Q6PEY1	159 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	DHRS13	Q6UX07	377 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.89	□□□□□ -1.63
CD44-215	ENST00000525241	RINL	Q6ZS11	566 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	MOGAT3	Q86VF5	341 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	CSGALNACT1	Q8TDX6	532 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	MORC4	Q8TE76	937 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	RUBCN	Q92622	972 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	VOPP1	Q96AW1	172 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	SIGLEC11	Q96RL6	698 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ZNF347	Q96SE7	839 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ABHD14A	Q9BUJ0	271 aa		4.89	□□□□□ -1.63

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