RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 MKRN2Q9H000 416 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 NUCKS1Q9H1E3 243 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 GANQ9H2C0 597 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TMEM245Q9H330 911 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TMEM51Q9NW97 253 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 TMEM63CQ9P1W3 806 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 CALCOCO1Q9P1Z2 691 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 LIMA1Q9UHB6 759 aaKnown RBP9.69□□□□□ -0.86
HDAC3-215ENST00000519474 GGA2Q9UJY4 613 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 PLA2G4CQ9UP65 541 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 SIK3Q9Y2K2 1263 aa9.69□□□□□ -0.86
HDAC3-215ENST00000519474 SPAG17Q6Q759 2223 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 PATE3B3GLJ2 98 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 CDX4O14627 284 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 EPHB6O15197 1021 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF217O75362 1048 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 MOCS2O96007 188 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 MMEP08473 750 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 C7P10643 843 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 HLA-EP13747 358 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF18P17022 549 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 CHRNB2P17787 502 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 TFE3P19532 575 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 TACR2P21452 398 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 PRKCHP24723 683 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 LIMK1P53667 647 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 POLR2FP61218 127 aaKnown RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 FOXK2Q01167 660 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 LMAN2Q12907 356 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 E2F5Q15329 346 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 CCDC183Q5T5S1 534 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 RAP1GAP2Q684P5 730 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 SLC36A4Q6YBV0 504 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 MMS22LQ6ZRQ5 1243 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 SLC26A9Q7LBE3 791 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 ERICH1Q86X53 443 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 SLC41A1Q8IVJ1 513 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 LGI2Q8N0V4 545 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 ATP6V0D2Q8N8Y2 350 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 C12orf50Q8NA57 414 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 TMEM35BQ8NCS4 154 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 WFIKKN2Q8TEU8 576 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 PIGKQ92643 395 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 NT5C3BQ969T7 300 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 C18orf8Q96DM3 657 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 MYO19Q96H55 970 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF419Q96HQ0 510 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 BTN2A3PQ96KV6 586 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 PRICKLE1Q96MT3 831 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 NOX5Q96PH1 765 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 NPY6RQ99463 290 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 TRIM62Q9BVG3 475 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 WSB2Q9NYS7 404 aaPredicted RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 SLC12A6Q9UHW9 1150 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 CDV3Q9UKY7 258 aaKnown RBP9.68□□□□□ -0.86
HDAC3-215ENST00000519474 CYP8B1Q9UNU6 501 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 GVINP1Q7Z2Y8 2422 aa9.68□□□□□ -0.86
HDAC3-215ENST00000519474 GON4LQ3T8J9 2241 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 MED19A0JLT2 244 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 FAM170AA1A519 330 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 F8VZ95 297 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 KHNYNO15037 678 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SYNCRIPO60506 623 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 HSF2BPO75031 334 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 GFPT2O94808 682 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 MBD3O95983 291 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 CYP1A1P04798 512 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ATP5BP06576 529 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 EPHX1P07099 455 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 DLDP09622 509 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 POLR2EP19388 210 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ITPKAP23677 461 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SOX5P35711 763 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 MATKP42679 507 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 JAM2P57087 298 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SNX16P57768 344 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 RNASE9P60153 205 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 RPL6Q02878 288 aaKnown RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF33AQ06730 810 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 CAMK2GQ13555 558 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SYCP1Q15431 976 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 STX1AQ16623 288 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 AASDHQ4L235 1098 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 C2CD6Q53TS8 623 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ARTNQ5T4W7 220 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 STPG1Q5TH74 334 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 FBXL22Q6P050 247 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ARMCX6Q7L4S7 300 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 C14orf80Q86SX3 495 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 XYLT1Q86Y38 959 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ZDHHC17Q8IUH5 632 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SYT12Q8IV01 421 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 MFN1Q8IWA4 741 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 APCDD1Q8J025 514 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 AHI1Q8N157 1196 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 CARNMT1Q8N4J0 409 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 ZNF366Q8N895 744 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 HJURPQ8NCD3 748 aaPredicted RBP9.67□□□□□ -0.86
HDAC3-215ENST00000519474 CPA5Q8WXQ8 436 aa9.67□□□□□ -0.86
HDAC3-215ENST00000519474 SIPA1Q96FS4 1042 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms