RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CLVS1Q8IUQ0 354 aaPredicted RBP9.91□□□□□ -0.82
VCAN-210ENST00000513960 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.91□□□□□ -0.82
VCAN-210ENST00000513960 NAT8LQ8N9F0 302 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 JOSD2Q8TAC2 188 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 C20orf27Q9GZN8 174 aa9.91□□□□□ -0.82
VCAN-210ENST00000513960 SLC25A27O95847 323 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 BPGMP07738 259 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CLCN3P51790 818 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ESRRGP62508 458 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 FSCBQ5H9T9 825 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CELF3Q5SZQ8 465 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 PLPPR4Q7Z2D5 763 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 PHTF2Q8N3S3 785 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 WDTC1Q8N5D0 677 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ARL10Q8N8L6 244 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 BHLHE22Q8NFJ8 381 aaPredicted RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 GIPC3Q8TF64 312 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 AZIN2Q96A70 460 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 DCPSQ96C86 337 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 C7orf26Q96N11 449 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 SMARCAD1Q9H4L7 1026 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ELP3Q9H9T3 547 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 USP29Q9HBJ7 922 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 TJP2Q9UDY2 1190 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 PCDHGB4Q9UN71 923 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 PCDHGB5Q9Y5G0 923 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 B4GALT5O43286 388 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ADCY6O43306 1168 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 FAM189A1O60320 539 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 B4GALT4O60513 344 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 IL18RAPO95256 599 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ARIH2O95376 493 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 GJB1P08034 283 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CCDC166P0CW27 439 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CSH1P0DML2 217 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CSH2P0DML3 217 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CXCL8P10145 99 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ETV4P43268 484 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ASPAP45381 313 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CDH8P55286 799 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 BCAR1P56945 870 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 MAP7D1Q3KQU3 841 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 PTPN20Q4JDL3 420 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 FAM102AQ5T9C2 384 aaPredicted RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 EEF1DP3Q658K8 133 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 OR6B2Q6IFH4 312 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CES3Q6UWW8 571 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 FRMD7Q6ZUT3 714 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 UNC5BQ8IZJ1 945 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 GPC2Q8N158 579 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 RNF169Q8NCN4 708 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 SREK1Q8WXA9 508 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 NKD2Q969F2 451 aaPredicted RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 SCYL1Q96KG9 808 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CCDC106Q9BWC9 280 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 RMI1Q9H9A7 625 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 DMTF1Q9Y222 760 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 HBP1O60381 514 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 TXNP10599 105 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 P4HA1P13674 534 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 PCSK6P29122 969 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 CDH5P33151 784 aaPredicted RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 IREB2P48200 963 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 MPP3Q13368 585 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 LAYNQ6UX15 382 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 NIPA2Q8N8Q9 360 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 NETO2Q8NC67 525 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ZFRQ96KR1 1074 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 HAUS8Q9BT25 410 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 DHX35Q9H5Z1 703 aaKnown RBP9.9□□□□□ -0.82
VCAN-210ENST00000513960 BLOC1S6Q9UL45 172 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 SH3GLB1Q9Y371 365 aa9.9□□□□□ -0.82
VCAN-210ENST00000513960 ARHGEF37A1IGU5 675 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 CAPN14A8MX76 684 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 PRPSAP2O60256 369 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 COX4I1P13073 169 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 KDELR1P24390 212 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 MLH1P40692 756 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 STT3AP46977 705 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 SLC26A2P50443 739 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 DLK2Q6UY11 383 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 FBXO16Q8IX29 292 aaPredicted RBP9.9□□□□□ -0.83
VCAN-210ENST00000513960 TNS4Q8IZW8 715 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 DIS3LQ8TF46 1054 aaKnown RBP9.9□□□□□ -0.83
VCAN-210ENST00000513960 CDKL2Q92772 493 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 ADPGKQ9BRR6 497 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 WDR83Q9BRX9 315 aaKnown RBP9.9□□□□□ -0.83
VCAN-210ENST00000513960 XYLT2Q9H1B5 865 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 RRN3Q9NYV6 651 aa9.9□□□□□ -0.83
VCAN-210ENST00000513960 TCRBV5S1A1TA0A578 114 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TPST1O60507 370 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 NOL3O60936 208 aaKnown RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 CDK4P11802 303 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 ITGAXP20702 1163 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PTPN7P35236 360 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 C10orf107Q8IVU9 208 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 FBXW8Q8N3Y1 598 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TSPAN14Q8NG11 270 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TMEM79Q9BSE2 394 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 MRPS26Q9BYN8 205 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms