RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 FANCLQ9NW38 375 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GFOD1Q9NXC2 390 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GMIPQ9P107 970 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ARPP21Q9UBL0 812 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 SIK3Q9Y2K2 1263 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 AXIN2Q9Y2T1 843 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TTLL3Q9Y4R7 772 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ASB4Q9Y574 426 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 KNDC1Q76NI1 1749 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 VWA3AA6NCI4 1184 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 LRRC53A6NM62 1247 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 TRDMT1O14717 391 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 TO15178 435 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SSX4O60224 188 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 SASH3O75995 380 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 OR7A10O76100 309 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ATG7O95352 703 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CRYZL1O95825 349 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ABL1P00519 1130 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ADAP00813 363 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 S100A8P05109 93 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PRKCBP05771 671 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 FYNP06241 537 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 FAM153BP0C7A2 387 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PRKCAP17252 672 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 M6PRP20645 277 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ME2P23368 584 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PTPN6P29350 595 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ATP12AP54707 1039 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 EIF3EP60228 445 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 FAM47AQ5JRC9 791 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CYP4F22Q6NT55 531 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ATG14Q6ZNE5 492 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CYP4V2Q6ZWL3 525 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 DHDDSQ86SQ9 333 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 HERC6Q8IVU3 1022 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CMTR2Q8IYT2 770 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 UBQLNLQ8IYU4 475 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CACTIN-AS1Q8N1I8 211 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 C17orf53Q8N3J3 647 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 RDM1Q8NG50 284 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 VANGL1Q8TAA9 524 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 BRSK1Q8TDC3 778 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PTCD3Q96EY7 689 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 HINFPQ9BQA5 517 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 NUDT16L1Q9BRJ7 211 aaKnown RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 DESI2Q9BSY9 194 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GSDMCQ9BYG8 508 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ILKAPQ9H0C8 392 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 ANTXR1Q9H6X2 564 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 KCNK13Q9HB14 408 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 C3orf14Q9HBI5 128 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CD320Q9NPF0 282 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 PCDHB16Q9NRJ7 776 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ASNSD1Q9NWL6 643 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 GTSE1Q9NYZ3 720 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 ZNF624Q9P2J8 865 aaPredicted RBP3.65□□□□□ -1.82
USP53-205ENST00000509769 SEC14L4Q9UDX3 406 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 UBQLN2Q9UHD9 624 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 CLIC4Q9Y696 253 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 KDRP35968 1356 aa3.65□□□□□ -1.82
USP53-205ENST00000509769 COL24A1Q17RW2 1714 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 KANTRA0A1W2PQU2 76 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ANKDD1BA6NHY2 528 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 NR5A2O00482 541 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FCHO1O14526 889 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PPEF2O14830 753 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 HSPA12AO43301 675 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ATP9BO43861 1147 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 UGT2B11O75310 529 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MOCS3O95396 460 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ZBTB11O95625 1053 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 ITGA2BP08514 1039 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 UMPSP11172 480 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PDHBP11177 359 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FEN1P39748 380 aaKnown RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 GSSP48637 474 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PTPN5P54829 565 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CREMQ03060 361 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 COASYQ13057 564 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PTK7Q13308 1070 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TTLL12Q14166 644 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 KYAT1Q16773 422 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ANKDD1AQ495B1 522 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ZBED5Q49AG3 693 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ATP13A4Q4VNC1 1196 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PCID2Q5JVF3 399 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 WDR45BQ5MNZ6 344 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 FAM26FQ5R3K3 315 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 TMEM53Q6P2H8 277 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ARHGAP11AQ6P4F7 1023 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SLC22A9Q8IVM8 553 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 RHOT1Q8IXI2 618 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 MB21D2Q8IYB1 491 aaPredicted RBP3.65□□□□□ -1.83
USP53-205ENST00000509769 RCOR2Q8IZ40 523 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 CDK20Q8IZL9 346 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 SMYD1Q8NB12 490 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 UXS1Q8NBZ7 420 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 PLEKHO2Q8TD55 490 aa3.65□□□□□ -1.83
USP53-205ENST00000509769 ARL8AQ96BM9 186 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms