RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PRDM16Q9HAZ2 1276 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 ZBTB26Q9HCK0 441 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 TBC1D14Q9P2M4 693 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 PTGDR2Q9Y5Y4 395 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 SMTNL1A8MU46 457 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 COQ9O75208 318 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 GLUD1P00367 558 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 MT-ND5P03915 603 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 TCEA1P23193 301 aaKnown RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 GLUD2P49448 558 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 RASSF2P50749 326 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 CBFBQ13951 182 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 POLD3Q15054 466 aaPredicted RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 TLDC1Q6P9B6 456 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 CREB3L2Q70SY1 520 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 EPM2AIP1Q7L775 607 aaPredicted RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 LAS2Q8IYD9 372 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 GLMPQ8WWB7 406 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 LRTOMTQ8WZ04 291 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 A0A1B0GUV1 79 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 INAFM1C9JVW0 142 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 RFPL1O75677 317 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 ARSBP15848 533 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 Q0VFX4 171 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 TTF1Q15361 905 aaPredicted RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 TMEM196Q5HYL7 178 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 DNTTIP2Q5QJE6 756 aaKnown RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 RNF220Q5VTB9 566 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 SESTD1Q86VW0 696 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 CADM3Q8N126 398 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 APIPQ96GX9 242 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 INPP4AQ96PE3 977 aaPredicted RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 RETREG1Q9H6L5 497 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 C1orf112Q9NSG2 853 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 KCNG2Q9UJ96 466 aa3.27□□□□□ -1.89
NUP54-208ENST00000508604 G3BP2Q9UN86 482 aaKnown RBP3.27□□□□□ -1.89
NUP54-208ENST00000508604 SCN5AQ14524 2016 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 A0A0B4J293 547 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 A0A1B0GVT2 93 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 PLSCR5A0PG75 271 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 SERINC4A6NH21 518 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 FOXO6A8MYZ6 492 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 ZSCAN9O15535 394 aaPredicted RBP3.26□□□□□ -1.89
NUP54-208ENST00000508604 KCNQ3O43525 872 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 WNT1P04628 370 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 FCGR1AP12314 374 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 MYF5P13349 255 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 ATICP31939 592 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 COASYQ13057 564 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 GPS2Q13227 327 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 P3H1Q32P28 736 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 FNBP1LQ5T0N5 605 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 FAM90A2PQ658T7 463 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 SLC16A12Q6ZSM3 486 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 CLASRPQ8N2M8 674 aaKnown RBP3.26□□□□□ -1.89
NUP54-208ENST00000508604 SRFBP1Q8NEF9 429 aaKnown RBP3.26□□□□□ -1.89
NUP54-208ENST00000508604 GABPB2Q8TAK5 448 aaPredicted RBP3.26□□□□□ -1.89
NUP54-208ENST00000508604 RTP4Q96DX8 246 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 URB1-AS1Q96HZ7 61 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 MSLNLQ96KJ4 702 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 GPR78Q96P69 363 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 DUX5Q96PT3 197 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 WDR24Q96S15 920 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 MAP6D1Q9H9H5 199 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 SPAG4Q9NPE6 437 aa3.26□□□□□ -1.89
NUP54-208ENST00000508604 TYW1Q9NV66 732 aaKnown RBP3.26□□□□□ -1.89
NUP54-208ENST00000508604 BECN2A8MW95 431 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 THAP12O43422 761 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 RGS14O43566 566 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 DDNO94850 711 aaPredicted RBP3.25□□□□□ -1.89
NUP54-208ENST00000508604 IL18RAPO95256 599 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 ANXA2P07355 339 aaKnown RBP3.25□□□□□ -1.89
NUP54-208ENST00000508604 MCL1Q07820 350 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 ZNF718Q3SXZ3 478 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 ALG10Q5BKT4 473 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 ALG10BQ5I7T1 473 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 FAXCQ5TGI0 409 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 CCDC144NLQ6NUI1 221 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 DARS2Q6PI48 645 aaKnown RBP3.25□□□□□ -1.89
NUP54-208ENST00000508604 CAMK1DQ8IU85 385 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 OR52N4Q8NGI2 321 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 CATSPERBQ9H7T0 1116 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 CKAP5Q14008 2032 aa3.25□□□□□ -1.89
NUP54-208ENST00000508604 RFPL3SP0C7P2 107 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 RPL17P18621 184 aaKnown RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 TGM2P21980 687 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 RAB27AP51159 221 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 SEC61A1P61619 476 aaKnown RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 DDR1Q08345 913 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 PMPCAQ10713 525 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ZNF672Q499Z4 452 aaPredicted RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 MINDY4Q4G0A6 757 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 FAM76BQ5HYJ3 339 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 KIAA1755Q5JYT7 1200 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ASPHD1Q5U4P2 390 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 ABLIM2Q6H8Q1 611 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 CCDC149Q6ZUS6 474 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 KRTAP5-2Q701N4 177 aa3.24□□□□□ -1.89
NUP54-208ENST00000508604 H1FNTQ75WM6 255 aaPredicted RBP3.24□□□□□ -1.89
NUP54-208ENST00000508604 C16orf82Q7Z2V1 217 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms