RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 CD70P32970 193 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 TYRO3Q06418 890 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 MBLAC2Q68D91 279 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 RNF43Q68DV7 783 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 SLC26A9Q7LBE3 791 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 KIAA0907Q7Z7F0 614 aaPredicted RBP34.42■■■■□ 3.1
CBX4-203ENST00000494546 LGI2Q8N0V4 545 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 ZNF557Q8N988 423 aaPredicted RBP34.42■■■■□ 3.1
CBX4-203ENST00000494546 DDX1Q92499 740 aaKnown RBP34.42■■■■□ 3.1
CBX4-203ENST00000494546 RNF34Q969K3 372 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 RTKNQ9BST9 563 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 RXFP3Q9NSD7 469 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 SLC12A6Q9UHW9 1150 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 PLA2G4CQ9UP65 541 aa34.42■■■■□ 3.1
CBX4-203ENST00000494546 DAB1O75553 588 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 GFPT2O94808 682 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 EPHX1P07099 455 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 CDH5P33151 784 aaPredicted RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 RPL6Q02878 288 aaKnown RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 FNDC3BQ53EP0 1204 aaKnown RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 CCDC117Q8IWD4 279 aaPredicted RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 DEFB119Q8N690 84 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 ATP6V0D2Q8N8Y2 350 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 PIGKQ92643 395 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 PCMTD1Q96MG8 357 aaPredicted RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 NLRC4Q9NPP4 1024 aa34.41■■■■□ 3.1
CBX4-203ENST00000494546 LIMA1Q9UHB6 759 aaKnown RBP34.41■■■■□ 3.1
CBX4-203ENST00000494546 IGHV1OR15-9A0A0B4J2B8 117 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 SLC2A3P11169 496 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 HLA-EP13747 358 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 TACR2P21452 398 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 PTGER3P43115 390 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 EIF4EBP2Q13542 120 aaPredicted RBP34.4■■■■□ 3.1
CBX4-203ENST00000494546 CDH18Q13634 790 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 SLC36A4Q6YBV0 504 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 ERICH1Q86X53 443 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 ZDHHC17Q8IUH5 632 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 FIBINQ8TAL6 211 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 MKRN2Q9H000 416 aaKnown RBP34.4■■■■□ 3.1
CBX4-203ENST00000494546 PRDM16Q9HAZ2 1276 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 CD93Q9NPY3 652 aa34.4■■■■□ 3.1
CBX4-203ENST00000494546 KCNU1A8MYU2 1149 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 SLC30A4O14863 429 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 EPHB6O15197 1021 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 AP5Z1O43299 807 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 ATP5BP06576 529 aaKnown RBP34.39■■■■□ 3.1
CBX4-203ENST00000494546 MMEP08473 750 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 POLR2EP19388 210 aaKnown RBP34.39■■■■□ 3.1
CBX4-203ENST00000494546 ABCB4P21439 1286 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 CCR1P32246 355 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 RNASE9P60153 205 aaKnown RBP34.39■■■■□ 3.1
CBX4-203ENST00000494546 LMAN2Q12907 356 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 NME3Q13232 169 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 SYCP1Q15431 976 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 AOPEPQ8N6M6 819 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 ZNF397Q8NF99 534 aaPredicted RBP34.39■■■■□ 3.1
CBX4-203ENST00000494546 EPS8L1Q8TE68 723 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 C18orf8Q96DM3 657 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 SIK3Q9Y2K2 1263 aa34.39■■■■□ 3.1
CBX4-203ENST00000494546 DCDC2BA2VCK2 349 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 LGALS16A8MUM7 142 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 NOS2P35228 1153 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 NCAPHQ15003 741 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 SPDYCQ5MJ68 293 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 LYSMD4Q5XG99 296 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 TMPRSS6Q8IU80 811 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 PLXND1Q9Y4D7 1925 aa34.38■■■■□ 3.09
CBX4-203ENST00000494546 F5H5T6 163 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 LUC7L3O95232 432 aaKnown RBP34.37■■■■□ 3.09
CBX4-203ENST00000494546 LSM8O95777 96 aaKnown RBP34.37■■■■□ 3.09
CBX4-203ENST00000494546 DLDP09622 509 aaKnown RBP34.37■■■■□ 3.09
CBX4-203ENST00000494546 ZNF18P17022 549 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 UBXN1Q04323 297 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 PTPRNQ16849 979 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 ZNF366Q8N895 744 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 SLC20A1Q8WUM9 679 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 SPAG5Q96R06 1193 aa34.37■■■■□ 3.09
CBX4-203ENST00000494546 M0QYT0 321 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 SOX5P35711 763 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 GABRB2P47870 512 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 FOXK2Q01167 660 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 ANO6Q4KMQ2 910 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 C2CD6Q53TS8 623 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 NAA35Q5VZE5 725 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 CACUL1Q86Y37 369 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 MSANTD4Q8NCY6 345 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 CPA5Q8WXQ8 436 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 LMLNQ96KR4 655 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 NAT10Q9H0A0 1025 aaKnown RBP34.36■■■■□ 3.09
CBX4-203ENST00000494546 TMEM245Q9H330 911 aa34.36■■■■□ 3.09
CBX4-203ENST00000494546 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP34.36■■■■□ 3.093e-8■■■■□ 24.6
CBX4-203ENST00000494546 ATXN2Q99700 1313 aaKnown RBP34.35■■■■□ 3.09
CBX4-203ENST00000494546 PATE3B3GLJ2 98 aa34.35■■■■□ 3.09
CBX4-203ENST00000494546 H0Y626 953 aa34.35■■■■□ 3.09
CBX4-203ENST00000494546 KHNYNO15037 678 aaKnown RBP34.35■■■■□ 3.09
CBX4-203ENST00000494546 MATKP42679 507 aa34.35■■■■□ 3.09
CBX4-203ENST00000494546 JAM2P57087 298 aa34.35■■■■□ 3.09
CBX4-203ENST00000494546 FSCBQ5H9T9 825 aa34.35■■■■□ 3.09
CBX4-203ENST00000494546 FAM102AQ5T9C2 384 aaPredicted RBP34.35■■■■□ 3.09
CBX4-203ENST00000494546 CAVIN1Q6NZI2 390 aaKnown RBP34.35■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms