RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CCDC157Q569K6 752 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 ADGRF1Q5T601 910 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 TMEM270Q6UE05 265 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 C1orf216Q8TAB5 229 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 MDM1Q8TC05 714 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 WFIKKN2Q8TEU8 576 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 MYEOVQ96EZ4 313 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 TMEM245Q9H330 911 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 ABCC13Q9NSE7 274 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 ARMCX3Q9UH62 379 aaPredicted RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.16□□□□□ -0.3
SKA1-205ENST00000494518 PLA2G4CQ9UP65 541 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 APOBEC2Q9Y235 224 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 COQ4Q9Y3A0 265 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 PCDHB4Q9Y5E5 795 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 SNX11Q9Y5W9 270 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 SMG1Q96Q15 3661 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 ASXL3Q9C0F0 2248 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 FAM221BA6H8Z2 402 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 RNF225M0QZC1 329 aaPredicted RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 SEMA4FO95754 770 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 DNTTP04053 509 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 ATXN1LP0C7T5 689 aaKnown RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 SETSIPP0DME0 302 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 POLR2EP19388 210 aaKnown RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 FKBP3Q00688 224 aaKnown RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 IL9RQ01113 521 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 E2F5Q15329 346 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 PKDCCQ504Y2 493 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 FAM133BQ5BKY9 247 aaKnown RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 ZNF658Q5TYW1 1059 aaPredicted RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 PMF1Q6P1K2 205 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 PROSER1Q86XN7 944 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 FMR1NBQ8N0W7 255 aaPredicted RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 AHI1Q8N157 1196 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 PPM1KQ8N3J5 372 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 RHBDD1Q8TEB9 315 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 GANCQ8TET4 914 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 KCTD13Q8WZ19 329 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 SLC35C1Q96A29 364 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 ZSWIM1Q9BR11 485 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 MIS12Q9H081 205 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 TM9SF3Q9HD45 589 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 PRSS16Q9NQE7 514 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 CNGB3Q9NQW8 809 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 RMND1Q9NWS8 449 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.15□□□□□ -0.3
SKA1-205ENST00000494518 NFE2L3Q9Y4A8 694 aa13.15□□□□□ -0.3
SKA1-205ENST00000494518 LOC400499M0QZD8 3231 aa13.15□□□□□ -0.31
SKA1-205ENST00000494518 FAM47DPA6NHR8 397 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 MOCS2O96007 188 aaPredicted RBP13.14□□□□□ -0.31
SKA1-205ENST00000494518 LTFP02788 710 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 CAPNS1P04632 268 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 DLDP09622 509 aaKnown RBP13.14□□□□□ -0.31
SKA1-205ENST00000494518 FMO5P49326 533 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 AFF3P51826 1226 aaKnown RBP13.14□□□□□ -0.31
SKA1-205ENST00000494518 TBX4P57082 545 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 KCNT1Q5JUK3 1230 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 PIK3R6Q5UE93 754 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 NADSYN1Q6IA69 706 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 MSANTD2Q6P1R3 559 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 IL27RAQ6UWB1 636 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 LRSAM1Q6UWE0 723 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 LCLAT1Q6UWP7 414 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 CCNI2Q6ZMN8 369 aaPredicted RBP13.14□□□□□ -0.31
SKA1-205ENST00000494518 MMS22LQ6ZRQ5 1243 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 MFN1Q8IWA4 741 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 CARNMT1Q8N4J0 409 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.14□□□□□ -0.31
SKA1-205ENST00000494518 ADAM32Q8TC27 787 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 BIRC7Q96CA5 298 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 CCDC34Q96HJ3 373 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 PRICKLE1Q96MT3 831 aaPredicted RBP13.14□□□□□ -0.31
SKA1-205ENST00000494518 NT5C1BQ96P26 610 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 BTBD1Q9H0C5 482 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 TOR4AQ9NXH8 423 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 STOML2Q9UJZ1 356 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 ANKRD6Q9Y2G4 727 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 ATP6V1DQ9Y5K8 247 aa13.14□□□□□ -0.31
SKA1-205ENST00000494518 ACSL4O60488 711 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 SIN3BO75182 1162 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 LATS1O95835 1130 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 IGLV3-27P01718 113 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 ATP5BP06576 529 aaKnown RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 ZNF883P0CG24 379 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 TBXAS1P24557 533 aaPredicted RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 CSKP41240 450 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 SLC11A2P49281 568 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 ZNF445P59923 1031 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 RPS24P62847 133 aaKnown RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 TEAD4Q15561 434 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 TTC31Q49AM3 519 aaPredicted RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 CCDC40Q4G0X9 1142 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 ZNF776Q68DI1 518 aaPredicted RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 KLHL10Q6JEL2 608 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 RRAGAQ7L523 313 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 ADAT2Q7Z6V5 191 aaKnown RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 KIAA0907Q7Z7F0 614 aaPredicted RBP13.13□□□□□ -0.31
SKA1-205ENST00000494518 ARHGEF19Q8IW93 802 aa13.13□□□□□ -0.31
SKA1-205ENST00000494518 DHX40Q8IX18 779 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms